=>> Building biology/py-macs3 build started at Fri Jun 5 19:05:31 JST 2026 port directory: /usr/ports/biology/py-macs3 package name: py311-MACS3-3.0.4 building for: FreeBSD curamd64-setuptools-job-02 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1664 May 2 10:17 /usr/ports/biology/py-macs3/Makefile Ports top last git commit: a8b187544 Ports top unclean checkout: yes Port dir last git commit: a8b187544 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4 Host OSVERSION: 1600018 Jail OSVERSION: 1600018 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600018 UNAME_v=FreeBSD 16.0-CURRENT 1600018 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4 MASTERMNT=/usr/local/poudriere/data/.m/curamd64-setuptools/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/curamd64-setuptools/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=curamd64-setuptools SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/curamd64-setuptools/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs3/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs3/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs3/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs3/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.2 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/py311-MACS3" EXAMPLESDIR="share/examples/py311-MACS3" DATADIR="share/py311-MACS3" WWWDIR="www/py311-MACS3" ETCDIR="etc/py311-MACS3" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-MACS3 DOCSDIR=/usr/local/share/doc/py311-MACS3 EXAMPLESDIR=/usr/local/share/examples/py311-MACS3 WWWDIR=/usr/local/www/py311-MACS3 ETCDIR=/usr/local/etc/py311-MACS3 --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 12099 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-MACS3-3.0.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [curamd64-setuptools-job-02] Installing pkg-2.7.5... [curamd64-setuptools-job-02] Extracting pkg-2.7.5: .......... done ===> py311-MACS3-3.0.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-MACS3-3.0.4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user => macs3-project-MACS-v3.0.4_GH0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://codeload.github.com/macs3-project/MACS/tar.gz/v3.0.4?dummy=/macs3-project-MACS-v3.0.4_GH0.tar.gz fetch: https://codeload.github.com/macs3-project/MACS/tar.gz/v3.0.4?dummy=/macs3-project-MACS-v3.0.4_GH0.tar.gz: size unknown fetch: https://codeload.github.com/macs3-project/MACS/tar.gz/v3.0.4?dummy=/macs3-project-MACS-v3.0.4_GH0.tar.gz: size of remote file is not known macs3-project-MACS-v3.0.4_GH0.tar.gz 191 MB 11 MBps 17s ===> Fetching all distfiles required by py311-MACS3-3.0.4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py311-MACS3-3.0.4 for building => SHA256 Checksum OK for macs3-project-MACS-v3.0.4_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py311-MACS3-3.0.4 for building ===> Extracting for py311-MACS3-3.0.4 => SHA256 Checksum OK for macs3-project-MACS-v3.0.4_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-MACS3-3.0.4 ===> Applying FreeBSD patches for py311-MACS3-3.0.4 from /usr/ports/biology/py-macs3/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-MACS3-3.0.4 depends on package: py311-wheel>0 - not found ===> Installing existing package /packages/All/py311-wheel-0.47.0.pkg [curamd64-setuptools-job-02] Installing py311-wheel-0.47.0... [curamd64-setuptools-job-02] `-- Installing py311-packaging-26.2... [curamd64-setuptools-job-02] | `-- Installing python311-3.11.15_2... [curamd64-setuptools-job-02] | | `-- Installing gettext-runtime-1.0... [curamd64-setuptools-job-02] | | `-- Installing indexinfo-0.3.1_1... [curamd64-setuptools-job-02] | | `-- Extracting indexinfo-0.3.1_1: .... done [curamd64-setuptools-job-02] | | `-- Extracting gettext-runtime-1.0: .......... done [curamd64-setuptools-job-02] | | `-- Installing libffi-3.5.1... [curamd64-setuptools-job-02] | | `-- Extracting libffi-3.5.1: .......... done [curamd64-setuptools-job-02] | | `-- Installing mpdecimal-4.0.1... [curamd64-setuptools-job-02] | | `-- Extracting mpdecimal-4.0.1: .......... done [curamd64-setuptools-job-02] | | `-- Installing openssl-3.0.20,1... [curamd64-setuptools-job-02] | | `-- Extracting openssl-3.0.20,1: .......... done [curamd64-setuptools-job-02] | | `-- Installing readline-8.3.3... [curamd64-setuptools-job-02] | | `-- Extracting readline-8.3.3: .......... done [curamd64-setuptools-job-02] | `-- Extracting python311-3.11.15_2: .......... done [curamd64-setuptools-job-02] `-- Extracting py311-packaging-26.2: .......... done [curamd64-setuptools-job-02] Extracting py311-wheel-0.47.0: .......... done ===== Message from python311-3.11.15_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-MACS3-3.0.4 depends on package: py311-wheel>0 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-setuptools>=0 - not found ===> Installing existing package /packages/All/py311-setuptools-81.0.0.pkg [curamd64-setuptools-job-02] Installing py311-setuptools-81.0.0... [curamd64-setuptools-job-02] `-- Installing py311-more-itertools-10.6.0... [curamd64-setuptools-job-02] `-- Extracting py311-more-itertools-10.6.0: .......... done [curamd64-setuptools-job-02] Extracting py311-setuptools-81.0.0: .......... done ===> py311-MACS3-3.0.4 depends on package: py311-setuptools>=0 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: simde>0 - not found ===> Installing existing package /packages/All/simde-0.8.2.pkg [curamd64-setuptools-job-02] Installing simde-0.8.2... [curamd64-setuptools-job-02] Extracting simde-0.8.2: .......... done ===> py311-MACS3-3.0.4 depends on package: simde>0 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-cython>0 - not found ===> Installing existing package /packages/All/py311-cython-3.2.4.pkg [curamd64-setuptools-job-02] Installing py311-cython-3.2.4... [curamd64-setuptools-job-02] Extracting py311-cython-3.2.4: .......... done ===> py311-MACS3-3.0.4 depends on package: py311-cython>0 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-numpy1>=1.16 - not found ===> Installing existing package /packages/All/py311-numpy1-1.26.4_3.pkg [curamd64-setuptools-job-02] Installing py311-numpy1-1.26.4_3... [curamd64-setuptools-job-02] `-- Installing gcc14-14.2.0_4... [curamd64-setuptools-job-02] | `-- Installing binutils-2.44,1... [curamd64-setuptools-job-02] | | `-- Installing zstd-1.5.7_1... [curamd64-setuptools-job-02] | | `-- Extracting zstd-1.5.7_1: .......... done [curamd64-setuptools-job-02] | `-- Extracting binutils-2.44,1: .......... done [curamd64-setuptools-job-02] | `-- Installing gmp-6.3.0... [curamd64-setuptools-job-02] | `-- Extracting gmp-6.3.0: .......... done [curamd64-setuptools-job-02] | `-- Installing mpc-1.4.1... [curamd64-setuptools-job-02] | | `-- Installing mpfr-4.2.2,1... [curamd64-setuptools-job-02] | | `-- Extracting mpfr-4.2.2,1: .......... done [curamd64-setuptools-job-02] | `-- Extracting mpc-1.4.1: .......... done [curamd64-setuptools-job-02] `-- Extracting gcc14-14.2.0_4: .......... done [curamd64-setuptools-job-02] `-- Installing openblas-0.3.30,2... [curamd64-setuptools-job-02] `-- Extracting openblas-0.3.30,2: .......... done [curamd64-setuptools-job-02] Extracting py311-numpy1-1.26.4_3: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py311-MACS3-3.0.4 depends on package: py311-numpy1>=1.16 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-scipy>1.11.1 - not found ===> Installing existing package /packages/All/py311-scipy-1.17.1_1,1.pkg [curamd64-setuptools-job-02] Installing py311-scipy-1.17.1_1,1... [curamd64-setuptools-job-02] `-- Installing qhull-8.0.2_3,1... [curamd64-setuptools-job-02] `-- Extracting qhull-8.0.2_3,1: .......... done [curamd64-setuptools-job-02] Extracting py311-scipy-1.17.1_1,1: .......... done ===> py311-MACS3-3.0.4 depends on package: py311-scipy>1.11.1 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-cykhash>=2.0,<3.0 - not found ===> Installing existing package /packages/All/py311-cykhash-2.0.1_1.pkg [curamd64-setuptools-job-02] Installing py311-cykhash-2.0.1_1... [curamd64-setuptools-job-02] Extracting py311-cykhash-2.0.1_1: .......... done ===> py311-MACS3-3.0.4 depends on package: py311-cykhash>=2.0,<3.0 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-scikit-learn>=1.3 - not found ===> Installing existing package /packages/All/py311-scikit-learn-1.8.0_1.pkg [curamd64-setuptools-job-02] Installing py311-scikit-learn-1.8.0_1... [curamd64-setuptools-job-02] `-- Installing py311-joblib-1.5.1... [curamd64-setuptools-job-02] `-- Extracting py311-joblib-1.5.1: .......... done [curamd64-setuptools-job-02] `-- Installing py311-threadpoolctl-3.6.0... [curamd64-setuptools-job-02] `-- Extracting py311-threadpoolctl-3.6.0: .......... done [curamd64-setuptools-job-02] Extracting py311-scikit-learn-1.8.0_1: .......... done ===> py311-MACS3-3.0.4 depends on package: py311-scikit-learn>=1.3 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-hmmlearn>=0.3.2 - not found ===> Installing existing package /packages/All/py311-hmmlearn-0.3.3_1.pkg [curamd64-setuptools-job-02] Installing py311-hmmlearn-0.3.3_1... [curamd64-setuptools-job-02] Extracting py311-hmmlearn-0.3.3_1: .......... done ===> py311-MACS3-3.0.4 depends on package: py311-hmmlearn>=0.3.2 - found ===> Returning to build of py311-MACS3-3.0.4 ===> py311-MACS3-3.0.4 depends on package: py311-setuptools>=63.1.0 - found ===> py311-MACS3-3.0.4 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-MACS3-3.0.4 warning: MACS3/Signal/PairedEndTrack.py:367:15: Unknown type declaration 'cnp.void' in annotation, ignoring warning: MACS3/Signal/PairedEndTrack.py:1611:15: Unknown type declaration 'cnp.void' in annotation, ignoring Compiling MACS3/Signal/HMMR_EM.py because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.py because it changed. Compiling MACS3/Signal/HMMR_HMM.py because it changed. Compiling MACS3/Signal/Prob.py because it changed. Compiling MACS3/Signal/Region.py because it changed. Compiling MACS3/Signal/Pileup.py because it changed. Compiling MACS3/Signal/PileupV2.py because it changed. Compiling MACS3/Signal/PeakModel.py because it changed. Compiling MACS3/Signal/PeakDetect.py because it changed. Compiling MACS3/Signal/SignalProcessing.py because it changed. Compiling MACS3/Signal/FixWidthTrack.py because it changed. Compiling MACS3/Signal/PairedEndTrack.py because it changed. Compiling MACS3/Signal/BedGraph.py because it changed. Compiling MACS3/Signal/ScoreTrack.py because it changed. Compiling MACS3/Signal/CallPeakUnit.py because it changed. Compiling MACS3/Signal/VariantStat.py because it changed. Compiling MACS3/Signal/ReadAlignment.py because it changed. Compiling MACS3/Signal/RACollection.py because it changed. Compiling MACS3/Signal/UnitigRACollection.py because it changed. Compiling MACS3/Signal/PosReadsInfo.py because it changed. Compiling MACS3/Signal/PeakVariants.py because it changed. Compiling MACS3/IO/Parser.py because it changed. Compiling MACS3/IO/PeakIO.py because it changed. Compiling MACS3/IO/BedGraphIO.py because it changed. Compiling MACS3/IO/BAM.py because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.py [ 2/25] Cythonizing MACS3/IO/BedGraphIO.py [ 3/25] Cythonizing MACS3/IO/Parser.py [ 4/25] Cythonizing MACS3/IO/PeakIO.py [ 5/25] Cythonizing MACS3/Signal/BedGraph.py [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.py [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.py [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.py [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.py [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.py [11/25] Cythonizing MACS3/Signal/PairedEndTrack.py [12/25] Cythonizing MACS3/Signal/PeakDetect.py [13/25] Cythonizing MACS3/Signal/PeakModel.py [14/25] Cythonizing MACS3/Signal/PeakVariants.py [15/25] Cythonizing MACS3/Signal/Pileup.py [16/25] Cythonizing MACS3/Signal/PileupV2.py [17/25] Cythonizing MACS3/Signal/PosReadsInfo.py [18/25] Cythonizing MACS3/Signal/Prob.py [19/25] Cythonizing MACS3/Signal/RACollection.py [20/25] Cythonizing MACS3/Signal/ReadAlignment.py [21/25] Cythonizing MACS3/Signal/Region.py [22/25] Cythonizing MACS3/Signal/ScoreTrack.py [23/25] Cythonizing MACS3/Signal/SignalProcessing.py [24/25] Cythonizing MACS3/Signal/UnitigRACollection.py [25/25] Cythonizing MACS3/Signal/VariantStat.py running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-MACS3-3.0.4 running build running build_py creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3 copying MACS3/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3 creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/HMMR_EM.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_EM.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_EM.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_EM.cpython-311.so building 'MACS3.Signal.HMMR_Signal_Processing' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311.so building 'MACS3.Signal.HMMR_HMM' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/HMMR_HMM.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_HMM.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_HMM.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311.so building 'MACS3.Signal.Prob' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/Prob.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Prob.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Prob.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Prob.cpython-311.so building 'MACS3.Signal.Region' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/Signal/Region.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Region.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Region.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Region.cpython-311.so building 'MACS3.Signal.Pileup' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/Pileup.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Pileup.o -w -O3 -g0 cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/cPosValCalculation.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/cPosValCalculation.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Pileup.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/cPosValCalculation.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Pileup.cpython-311.so building 'MACS3.Signal.PileupV2' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/PileupV2.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PileupV2.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PileupV2.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PileupV2.cpython-311.so building 'MACS3.Signal.PeakModel' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/PeakModel.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakModel.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakModel.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakModel.cpython-311.so building 'MACS3.Signal.PeakDetect' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/Signal/PeakDetect.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakDetect.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakDetect.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakDetect.cpython-311.so building 'MACS3.Signal.SignalProcessing' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/SignalProcessing.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/SignalProcessing.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/SignalProcessing.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/SignalProcessing.cpython-311.so building 'MACS3.Signal.FixWidthTrack' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/FixWidthTrack.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/FixWidthTrack.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/FixWidthTrack.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311.so building 'MACS3.Signal.PairedEndTrack' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/PairedEndTrack.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PairedEndTrack.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PairedEndTrack.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311.so building 'MACS3.Signal.BedGraph' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/BedGraph.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/BedGraph.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/BedGraph.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/BedGraph.cpython-311.so building 'MACS3.Signal.ScoreTrack' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/ScoreTrack.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ScoreTrack.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ScoreTrack.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ScoreTrack.cpython-311.so building 'MACS3.Signal.CallPeakUnit' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/CallPeakUnit.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/CallPeakUnit.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/CallPeakUnit.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311.so building 'MACS3.Signal.VariantStat' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/VariantStat.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/VariantStat.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/VariantStat.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/VariantStat.cpython-311.so building 'MACS3.Signal.ReadAlignment' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/Signal/ReadAlignment.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ReadAlignment.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ReadAlignment.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ReadAlignment.cpython-311.so building 'MACS3.Signal.RACollection' extension creating build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/Signal/RACollection.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/RACollection.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/Signal/swalign.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/swalign.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/bfc.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bfc.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/bseq.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bseq.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/bubble.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bubble.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/htab.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/htab.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/ksw.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/ksw.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/kthread.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kthread.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/mag.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mag.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/misc.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/misc.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/mrope.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mrope.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/rld0.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rld0.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/rle.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rle.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/rope.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rope.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.11 -c MACS3/fermi-lite/unitig.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/unitig.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/RACollection.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/swalign.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bfc.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bseq.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bubble.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/htab.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/ksw.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kthread.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mag.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/misc.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mrope.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rld0.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rle.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rope.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/unitig.o -L/usr/local/lib -lm -lz -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/RACollection.cpython-311.so building 'MACS3.Signal.UnitigRACollection' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/Signal/UnitigRACollection.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/UnitigRACollection.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/UnitigRACollection.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311.so building 'MACS3.Signal.PosReadsInfo' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS3/Signal/PosReadsInfo.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PosReadsInfo.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PosReadsInfo.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311.so building 'MACS3.Signal.PeakVariants' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/Signal/PeakVariants.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakVariants.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakVariants.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakVariants.cpython-311.so building 'MACS3.IO.Parser' extension creating build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/IO/Parser.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/Parser.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/Parser.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/Parser.cpython-311.so building 'MACS3.IO.PeakIO' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/IO/PeakIO.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/PeakIO.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/PeakIO.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/PeakIO.cpython-311.so building 'MACS3.IO.BedGraphIO' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/IO/BedGraphIO.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BedGraphIO.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BedGraphIO.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BedGraphIO.cpython-311.so building 'MACS3.IO.BAM' extension cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.11 -c MACS3/IO/BAM.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BAM.o -w -O3 -g0 cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BAM.o -L/usr/local/lib -lm -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BAM.cpython-311.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/macs3 -> build/scripts-3.11 changing mode of build/scripts-3.11/macs3 from 644 to 755 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-MACS3-3.0.4 depends on package: py311-numpy1>=1.16 - found ===> py311-MACS3-3.0.4 depends on package: py311-scipy>1.11.1 - found ===> py311-MACS3-3.0.4 depends on package: py311-cykhash>=2.0,<3.0 - found ===> py311-MACS3-3.0.4 depends on package: py311-scikit-learn>=1.3 - found ===> py311-MACS3-3.0.4 depends on package: py311-hmmlearn>=0.3.2 - found ===> py311-MACS3-3.0.4 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-MACS3-3.0.4 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' copying MACS3/fermi-lite/ksw.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite running build_ext running build_scripts running install_lib creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3 copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/__init__.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3 creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BAM.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BedGraphIO.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/OutputWriter.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/Parser.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/PeakIO.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/__init__.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BedGraphIO.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/Parser.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/PeakIO.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/IO/BAM.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/BedGraph.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/CallPeakUnit.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/FixWidthTrack.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_EM.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_HMM.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_Signal_Processing.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PairedEndTrack.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakDetect.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakModel.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakVariants.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Pileup.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PileupV2.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PosReadsInfo.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Prob.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/RACollection.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ReadAlignment.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Region.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ScoreTrack.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/SignalProcessing.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/UnitigRACollection.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/VariantStat.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/__init__.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/RACollection.pxd -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/cPosValCalculation.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/cPosValCalculation.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/cPosValCalculation.pxd -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/swalign.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/swalign.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakDetect.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_EM.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Prob.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Region.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/Pileup.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PileupV2.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakModel.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/SignalProcessing.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/BedGraph.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ScoreTrack.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/VariantStat.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/ReadAlignment.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/RACollection.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Signal/PeakVariants.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/__init__.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/bdgbroadcall_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/bdgcmp_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/bdgdiff_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/bdgopt_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/bdgpeakcall_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/callpeak_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/callvar_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/cmbreps_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/filterdup_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/hmmratac_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/pileup_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/predictd_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/randsample_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Commands/refinepeak_cmd.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities/Constants.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities/Logger.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities/OptValidator.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/Utilities/__init__.py -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities creating /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bfc.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bseq.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/bubble.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/example.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/fml.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/htab.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/htab.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/internal.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/khash.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kmer.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kseq.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/ksort.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kstring.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/ksw.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/ksw.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kthread.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/kvec.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mag.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mag.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/misc.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mrope.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/mrope.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rld0.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rld0.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rle.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rle.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rope.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/rope.h -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/MACS3/fermi-lite/unitig.c -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/fermi-lite byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO/BAM.py to BAM.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO/BedGraphIO.py to BedGraphIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO/OutputWriter.py to OutputWriter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO/Parser.py to Parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO/PeakIO.py to PeakIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/IO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/BedGraph.py to BedGraph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/CallPeakUnit.py to CallPeakUnit.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/FixWidthTrack.py to FixWidthTrack.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/HMMR_EM.py to HMMR_EM.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/HMMR_HMM.py to HMMR_HMM.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/HMMR_Signal_Processing.py to HMMR_Signal_Processing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/PairedEndTrack.py to PairedEndTrack.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/PeakDetect.py to PeakDetect.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/PeakModel.py to PeakModel.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/PeakVariants.py to PeakVariants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/Pileup.py to Pileup.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/PileupV2.py to PileupV2.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/PosReadsInfo.py to PosReadsInfo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/Prob.py to Prob.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/RACollection.py to RACollection.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/ReadAlignment.py to ReadAlignment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/Region.py to Region.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/ScoreTrack.py to ScoreTrack.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/SignalProcessing.py to SignalProcessing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/UnitigRACollection.py to UnitigRACollection.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/VariantStat.py to VariantStat.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Signal/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/bdgcmp_cmd.py to bdgcmp_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/bdgdiff_cmd.py to bdgdiff_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/bdgopt_cmd.py to bdgopt_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/callpeak_cmd.py to callpeak_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/callvar_cmd.py to callvar_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/cmbreps_cmd.py to cmbreps_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/filterdup_cmd.py to filterdup_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/hmmratac_cmd.py to hmmratac_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/pileup_cmd.py to pileup_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/predictd_cmd.py to predictd_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/randsample_cmd.py to randsample_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Commands/refinepeak_cmd.py to refinepeak_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities/Constants.py to Constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities/Logger.py to Logger.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities/OptValidator.py to OptValidator.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/Utilities/__init__.py to __init__.cpython-311.pyc writing byte-compilation script '/tmp/tmp59lrm0y8.py' /usr/local/bin/python3.11 /tmp/tmp59lrm0y8.py removing /tmp/tmp59lrm0y8.py running install_egg_info Copying MACS3.egg-info to /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3-3.0.4-py3.11.egg-info running install_scripts copying build/scripts-3.11/macs3 -> /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/bin/macs3 to 755 writing list of installed files to '/wrkdirs/usr/ports/biology/py-macs3/work-py311/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/macs3 --> bin/macs3-3.11 Link: @bin/macs3 --> bin/macs3-3.11 /usr/bin/strip /wrkdirs/usr/ports/biology/py-macs3/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS3/*/*.so ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-06-05T10:05:31+0000' 'PKG_NOTE_ports_top_git_hash=a8b187544' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a8b187544' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.4' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-MACS3-3.0.4 ===> Building py311-MACS3-3.0.4 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-MACS3-3.0.4 build of biology/py-macs3@py311 | py311-MACS3-3.0.4 ended at Fri Jun 5 19:22:34 JST 2026 build time: 00:19:05