=>> Building biology/py-goatools build started at Thu Jun 4 16:02:46 JST 2026 port directory: /usr/ports/biology/py-goatools package name: py311-goatools-1.1.6_3 building for: FreeBSD curamd64-setuptools-job-01 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1138 May 2 10:17 /usr/ports/biology/py-goatools/Makefile Ports top last git commit: a8b187544 Ports top unclean checkout: yes Port dir last git commit: a8b187544 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4 Host OSVERSION: 1600018 Jail OSVERSION: 1600018 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600018 UNAME_v=FreeBSD 16.0-CURRENT 1600018 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4 MASTERMNT=/usr/local/poudriere/data/.m/curamd64-setuptools/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/curamd64-setuptools/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=curamd64-setuptools SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/curamd64-setuptools/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-goatools/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-goatools/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-goatools/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-goatools/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-goatools/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/goatools" EXAMPLESDIR="share/examples/goatools" DATADIR="share/goatools" WWWDIR="www/goatools" ETCDIR="etc/goatools" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/goatools DOCSDIR=/usr/local/share/doc/goatools EXAMPLESDIR=/usr/local/share/examples/goatools WWWDIR=/usr/local/www/goatools ETCDIR=/usr/local/etc/goatools --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 12099 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-goatools-1.1.6_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [curamd64-setuptools-job-01] Installing pkg-2.7.5... [curamd64-setuptools-job-01] Extracting pkg-2.7.5: .......... done ===> py311-goatools-1.1.6_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-goatools-1.1.6_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user => goatools-1.1.6.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/g/goatools/goatools-1.1.6.tar.gz goatools-1.1.6.tar.gz 14 MB 12 MBps 02s ===> Fetching all distfiles required by py311-goatools-1.1.6_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py311-goatools-1.1.6_3 for building => SHA256 Checksum OK for goatools-1.1.6.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by py311-goatools-1.1.6_3 for building ===> Extracting for py311-goatools-1.1.6_3 => SHA256 Checksum OK for goatools-1.1.6.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-goatools-1.1.6_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-goatools-1.1.6_3 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-81.0.0.pkg [curamd64-setuptools-job-01] Installing py311-setuptools-81.0.0... [curamd64-setuptools-job-01] `-- Installing py311-more-itertools-10.6.0... [curamd64-setuptools-job-01] | `-- Installing python311-3.11.15_2... [curamd64-setuptools-job-01] | | `-- Installing gettext-runtime-1.0... [curamd64-setuptools-job-01] | | `-- Installing indexinfo-0.3.1_1... [curamd64-setuptools-job-01] | | `-- Extracting indexinfo-0.3.1_1: .... done [curamd64-setuptools-job-01] | | `-- Extracting gettext-runtime-1.0: .......... done [curamd64-setuptools-job-01] | | `-- Installing libffi-3.5.1... [curamd64-setuptools-job-01] | | `-- Extracting libffi-3.5.1: .......... done [curamd64-setuptools-job-01] | | `-- Installing mpdecimal-4.0.1... [curamd64-setuptools-job-01] | | `-- Extracting mpdecimal-4.0.1: .......... done [curamd64-setuptools-job-01] | | `-- Installing openssl-3.0.20,1... [curamd64-setuptools-job-01] | | `-- Extracting openssl-3.0.20,1: .......... done [curamd64-setuptools-job-01] | | `-- Installing readline-8.3.3... [curamd64-setuptools-job-01] | | `-- Extracting readline-8.3.3: .......... done [curamd64-setuptools-job-01] | `-- Extracting python311-3.11.15_2: .......... done [curamd64-setuptools-job-01] `-- Extracting py311-more-itertools-10.6.0: .......... done [curamd64-setuptools-job-01] `-- Installing py311-packaging-26.2... [curamd64-setuptools-job-01] `-- Extracting py311-packaging-26.2: .......... done [curamd64-setuptools-job-01] `-- Installing py311-wheel-0.47.0... [curamd64-setuptools-job-01] `-- Extracting py311-wheel-0.47.0: .......... done [curamd64-setuptools-job-01] Extracting py311-setuptools-81.0.0: .......... done ===== Message from python311-3.11.15_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-goatools-1.1.6_3 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-goatools-1.1.6_3 ===> py311-goatools-1.1.6_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-goatools-1.1.6_3 setup.py:10: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as testCommand /wrkdirs/usr/ports/biology/py-goatools/work-py311/goatools-1.1.6/setup_helper.py:10: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources /usr/local/lib/python3.11/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:332: InformationOnly: Normalizing 'v1.1.6' to '1.1.6' self.metadata.version = self._normalize_version(self.metadata.version) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-goatools-1.1.6_3 setup.py:10: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as testCommand /wrkdirs/usr/ports/biology/py-goatools/work-py311/goatools-1.1.6/setup_helper.py:10: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources /usr/local/lib/python3.11/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:332: InformationOnly: Normalizing 'v1.1.6' to '1.1.6' self.metadata.version = self._normalize_version(self.metadata.version) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating build/lib/goatools copying goatools/__init__.py -> build/lib/goatools copying goatools/_version.py -> build/lib/goatools copying goatools/associations.py -> build/lib/goatools copying goatools/base.py -> build/lib/goatools copying goatools/evidence_codes.py -> build/lib/goatools copying goatools/go_enrichment.py -> build/lib/goatools copying goatools/go_search.py -> build/lib/goatools copying goatools/godag_obosm.py -> build/lib/goatools copying goatools/godag_plot.py -> build/lib/goatools copying goatools/godag_small.py -> build/lib/goatools copying goatools/mapslim.py -> build/lib/goatools copying goatools/multiple_testing.py -> build/lib/goatools copying goatools/nt_utils.py -> build/lib/goatools copying goatools/obo_parser.py -> build/lib/goatools copying goatools/obo_tasks.py -> build/lib/goatools copying goatools/pvalcalc.py -> build/lib/goatools copying goatools/randseed.py -> build/lib/goatools copying goatools/ratio.py -> build/lib/goatools copying goatools/semantic.py -> build/lib/goatools copying goatools/statsdescribe.py -> build/lib/goatools copying goatools/utils.py -> build/lib/goatools copying goatools/wr_tbl.py -> build/lib/goatools copying goatools/wr_tbl_class.py -> build/lib/goatools creating build/lib/goatools/godag copying goatools/godag/__init__.py -> build/lib/goatools/godag copying goatools/godag/consts.py -> build/lib/goatools/godag copying goatools/godag/go_tasks.py -> build/lib/goatools/godag copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag copying goatools/godag/prtfncs.py -> build/lib/goatools/godag copying goatools/godag/prttime.py -> build/lib/goatools/godag copying goatools/godag/relationship_combos.py -> build/lib/goatools/godag copying goatools/godag/relationship_str.py -> build/lib/goatools/godag copying goatools/godag/reldepth.py -> build/lib/goatools/godag copying goatools/godag/typedef.py -> build/lib/goatools/godag creating build/lib/goatools/gosubdag copying goatools/gosubdag/__init__.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_edges.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_most_specific.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_paths.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_tasks.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/godag_rcnt.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/godag_rcnt_init.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/gosubdag.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/gosubdag_init.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/utils.py -> build/lib/goatools/gosubdag creating build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/__init__.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go2color.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go_edge.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go_name_shorten.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go_node.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/goea_results.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/gosubdag_plot.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/plot.py -> build/lib/goatools/gosubdag/plot creating build/lib/goatools/gosubdag/rpt copying goatools/gosubdag/rpt/__init__.py -> build/lib/goatools/gosubdag/rpt copying goatools/gosubdag/rpt/wr_xlsx.py -> build/lib/goatools/gosubdag/rpt copying goatools/gosubdag/rpt/write_hierarchy.py -> build/lib/goatools/gosubdag/rpt creating build/lib/goatools/test_data copying goatools/test_data/__init__.py -> build/lib/goatools/test_data copying goatools/test_data/checks.py -> build/lib/goatools/test_data copying goatools/test_data/gafs.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data copying goatools/test_data/godag_timed.py -> build/lib/goatools/test_data copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data copying goatools/test_data/sorter.py -> build/lib/goatools/test_data copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data creating build/lib/goatools/test_data/sections copying goatools/test_data/sections/__init__.py -> build/lib/goatools/test_data/sections copying goatools/test_data/sections/data2018_07_find_enrichment.py -> build/lib/goatools/test_data/sections copying goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/lib/goatools/test_data/sections copying goatools/test_data/sections/gjoneska_pfenning.py -> build/lib/goatools/test_data/sections creating build/lib/goatools/test_data/cli copying goatools/test_data/cli/__init__.py -> build/lib/goatools/test_data/cli copying goatools/test_data/cli/find_enrichment_dflts.py -> build/lib/goatools/test_data/cli creating build/lib/goatools/cli copying goatools/cli/__init__.py -> build/lib/goatools/cli copying goatools/cli/compare_gos.py -> build/lib/goatools/cli copying goatools/cli/docopt_parse.py -> build/lib/goatools/cli copying goatools/cli/find_enrichment.py -> build/lib/goatools/cli copying goatools/cli/gos_get.py -> build/lib/goatools/cli copying goatools/cli/gosubdag_plot.py -> build/lib/goatools/cli copying goatools/cli/grouped.py -> build/lib/goatools/cli copying goatools/cli/ncbi_gene_results_to_python.py -> build/lib/goatools/cli copying goatools/cli/prt_terms.py -> build/lib/goatools/cli copying goatools/cli/wr_hierarchy.py -> build/lib/goatools/cli copying goatools/cli/wr_sections.py -> build/lib/goatools/cli creating build/lib/goatools/rpt copying goatools/rpt/__init__.py -> build/lib/goatools/rpt copying goatools/rpt/goea_nt_xfrm.py -> build/lib/goatools/rpt copying goatools/rpt/nts_xfrm.py -> build/lib/goatools/rpt copying goatools/rpt/prtfmt.py -> build/lib/goatools/rpt copying goatools/rpt/rpt_lev_depth.py -> build/lib/goatools/rpt copying goatools/rpt/write_hierarchy_base.py -> build/lib/goatools/rpt creating build/lib/goatools/anno copying goatools/anno/__init__.py -> build/lib/goatools/anno copying goatools/anno/annoreader_base.py -> build/lib/goatools/anno copying goatools/anno/broad_gos.py -> build/lib/goatools/anno copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno copying goatools/anno/eco2group.py -> build/lib/goatools/anno copying goatools/anno/factory.py -> build/lib/goatools/anno copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno copying goatools/anno/genetogo_reader.py -> build/lib/goatools/anno copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno copying goatools/anno/idtogos_reader.py -> build/lib/goatools/anno copying goatools/anno/opts.py -> build/lib/goatools/anno copying goatools/anno/update_association.py -> build/lib/goatools/anno creating build/lib/goatools/anno/init copying goatools/anno/init/__init__.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_gaf.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_genetogo.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_gpad.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_idtogos.py -> build/lib/goatools/anno/init copying goatools/anno/init/utils.py -> build/lib/goatools/anno/init creating build/lib/goatools/anno/extensions copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/factory.py -> build/lib/goatools/anno/extensions creating build/lib/goatools/goea copying goatools/goea/__init__.py -> build/lib/goatools/goea copying goatools/goea/go_enrichment_ns.py -> build/lib/goatools/goea creating build/lib/goatools/grouper copying goatools/grouper/__init__.py -> build/lib/goatools/grouper copying goatools/grouper/aart_geneproducts_all.py -> build/lib/goatools/grouper copying goatools/grouper/aart_geneproducts_one.py -> build/lib/goatools/grouper copying goatools/grouper/colors.py -> build/lib/goatools/grouper copying goatools/grouper/grprdflts.py -> build/lib/goatools/grouper copying goatools/grouper/grprobj.py -> build/lib/goatools/grouper copying goatools/grouper/grprobj_init.py -> build/lib/goatools/grouper copying goatools/grouper/grprplt.py -> build/lib/goatools/grouper copying goatools/grouper/hdrgos.py -> build/lib/goatools/grouper copying goatools/grouper/plotobj.py -> build/lib/goatools/grouper copying goatools/grouper/read_goids.py -> build/lib/goatools/grouper copying goatools/grouper/sorter.py -> build/lib/goatools/grouper copying goatools/grouper/sorter_gos.py -> build/lib/goatools/grouper copying goatools/grouper/sorter_nts.py -> build/lib/goatools/grouper copying goatools/grouper/tasks.py -> build/lib/goatools/grouper copying goatools/grouper/utils.py -> build/lib/goatools/grouper copying goatools/grouper/wr_sections.py -> build/lib/goatools/grouper copying goatools/grouper/wrxlsx.py -> build/lib/goatools/grouper creating build/lib/goatools/parsers copying goatools/parsers/__init__.py -> build/lib/goatools/parsers copying goatools/parsers/david_chart.py -> build/lib/goatools/parsers copying goatools/parsers/ncbi_gene_file_reader.py -> build/lib/goatools/parsers creating build/lib/goatools/semsim copying goatools/semsim/__init__.py -> build/lib/goatools/semsim creating build/lib/goatools/semsim/termwise copying goatools/semsim/termwise/__init__.py -> build/lib/goatools/semsim/termwise copying goatools/semsim/termwise/dag_a.py -> build/lib/goatools/semsim/termwise copying goatools/semsim/termwise/wang.py -> build/lib/goatools/semsim/termwise running egg_info writing goatools.egg-info/PKG-INFO writing dependency_links to goatools.egg-info/dependency_links.txt writing requirements to goatools.egg-info/requires.txt writing top-level names to goatools.egg-info/top_level.txt reading manifest file 'goatools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'goatools.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'goatools.test_data.nbt_3102' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'goatools.test_data.nbt_3102' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'goatools.test_data.nbt_3102' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'goatools.test_data.nbt_3102' to be distributed and are already explicitly excluding 'goatools.test_data.nbt_3102' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 UPDATING build/lib/goatools/_version.py set build/lib/goatools/_version.py to 'v1.1.6' running build_scripts creating build/scripts-3.11 copying and adjusting scripts/compare_gos.py -> build/scripts-3.11 copying scripts/fetch_associations.py -> build/scripts-3.11 copying and adjusting scripts/find_enrichment.py -> build/scripts-3.11 copying and adjusting scripts/go_plot.py -> build/scripts-3.11 copying and adjusting scripts/map_to_slim.py -> build/scripts-3.11 copying and adjusting scripts/ncbi_gene_results_to_python.py -> build/scripts-3.11 copying and adjusting scripts/plot_go_term.py -> build/scripts-3.11 copying and adjusting scripts/prt_terms.py -> build/scripts-3.11 copying and adjusting scripts/wr_hier.py -> build/scripts-3.11 copying and adjusting scripts/wr_sections.py -> build/scripts-3.11 changing mode of build/scripts-3.11/compare_gos.py from 644 to 755 changing mode of build/scripts-3.11/find_enrichment.py from 644 to 755 changing mode of build/scripts-3.11/go_plot.py from 644 to 755 changing mode of build/scripts-3.11/map_to_slim.py from 644 to 755 changing mode of build/scripts-3.11/ncbi_gene_results_to_python.py from 644 to 755 changing mode of build/scripts-3.11/plot_go_term.py from 644 to 755 changing mode of build/scripts-3.11/prt_terms.py from 644 to 755 changing mode of build/scripts-3.11/wr_hier.py from 644 to 755 changing mode of build/scripts-3.11/wr_sections.py from 644 to 755 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-goatools-1.1.6_3 depends on package: py311-pandas>0 - not found ===> Installing existing package /packages/All/py311-pandas-2.3.3_1,1.pkg [curamd64-setuptools-job-01] Installing py311-pandas-2.3.3_1,1... 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[curamd64-setuptools-job-01] | | `-- Extracting fribidi-1.0.16: .......... done [curamd64-setuptools-job-01] | | `-- Installing libXft-2.3.8... [curamd64-setuptools-job-01] | | `-- Extracting libXft-2.3.8: .......... done [curamd64-setuptools-job-01] | | `-- Installing libthai-0.1.30... [curamd64-setuptools-job-01] | | `-- Installing libdatrie-0.2.14_1... [curamd64-setuptools-job-01] | | `-- Extracting libdatrie-0.2.14_1: .......... done [curamd64-setuptools-job-01] | | `-- Extracting libthai-0.1.30: .......... done [curamd64-setuptools-job-01] | `-- Extracting pango-1.56.4_1: .......... done [curamd64-setuptools-job-01] `-- Extracting graphviz-14.1.5: .......... done [curamd64-setuptools-job-01] `-- Installing py311-pyparsing-3.3.2... [curamd64-setuptools-job-01] `-- Extracting py311-pyparsing-3.3.2: .......... done [curamd64-setuptools-job-01] Extracting py311-pydot-4.0.1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: gio-modules.ucl Generating GIO modules cache ===== Message from freetype2-2.14.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> py311-goatools-1.1.6_3 depends on package: py311-pydot>0 - found ===> Returning to build of py311-goatools-1.1.6_3 ===> py311-goatools-1.1.6_3 depends on package: py311-requests>0 - not found ===> Installing existing package /packages/All/py311-requests-2.33.1.pkg [curamd64-setuptools-job-01] Installing py311-requests-2.33.1... [curamd64-setuptools-job-01] `-- Installing py311-certifi-2026.4.22... [curamd64-setuptools-job-01] `-- Extracting py311-certifi-2026.4.22: .......... done [curamd64-setuptools-job-01] `-- Installing py311-charset-normalizer-3.4.7... [curamd64-setuptools-job-01] `-- Extracting py311-charset-normalizer-3.4.7: .......... done [curamd64-setuptools-job-01] `-- Installing py311-idna-3.13... [curamd64-setuptools-job-01] `-- Extracting py311-idna-3.13: .......... done [curamd64-setuptools-job-01] `-- Installing py311-pysocks-1.7.1_1... [curamd64-setuptools-job-01] `-- Extracting py311-pysocks-1.7.1_1: .......... done [curamd64-setuptools-job-01] `-- Installing py311-urllib3-2.6.3,1... [curamd64-setuptools-job-01] `-- Extracting py311-urllib3-2.6.3,1: .......... done [curamd64-setuptools-job-01] Extracting py311-requests-2.33.1: .......... done ===== Message from py311-urllib3-2.6.3,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> py311-goatools-1.1.6_3 depends on package: py311-requests>0 - found ===> Returning to build of py311-goatools-1.1.6_3 ===> py311-goatools-1.1.6_3 depends on package: py311-pygraphviz>0 - not found ===> Installing existing package /packages/All/py311-pygraphviz-1.6_2.pkg [curamd64-setuptools-job-01] Installing py311-pygraphviz-1.6_2... [curamd64-setuptools-job-01] Extracting py311-pygraphviz-1.6_2: .......... done ===> py311-goatools-1.1.6_3 depends on package: py311-pygraphviz>0 - found ===> Returning to build of py311-goatools-1.1.6_3 ===> py311-goatools-1.1.6_3 depends on package: wget>0 - not found ===> Installing existing package /packages/All/wget-1.25.0.pkg [curamd64-setuptools-job-01] Installing wget-1.25.0... [curamd64-setuptools-job-01] `-- Installing libidn2-2.3.8... [curamd64-setuptools-job-01] | `-- Installing libunistring-1.4.2... [curamd64-setuptools-job-01] | `-- Extracting libunistring-1.4.2: .......... done [curamd64-setuptools-job-01] `-- Extracting libidn2-2.3.8: .......... done [curamd64-setuptools-job-01] Extracting wget-1.25.0: .......... done ===> py311-goatools-1.1.6_3 depends on package: wget>0 - found ===> Returning to build of py311-goatools-1.1.6_3 ===> py311-goatools-1.1.6_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-goatools-1.1.6_3 ===> Generating temporary packing list setup.py:10: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as testCommand /wrkdirs/usr/ports/biology/py-goatools/work-py311/goatools-1.1.6/setup_helper.py:10: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources /usr/local/lib/python3.11/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:332: InformationOnly: Normalizing 'v1.1.6' to '1.1.6' self.metadata.version = self._normalize_version(self.metadata.version) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/local/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing goatools.egg-info/PKG-INFO writing dependency_links to goatools.egg-info/dependency_links.txt writing requirements to goatools.egg-info/requires.txt writing top-level names to goatools.egg-info/top_level.txt reading manifest file 'goatools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'goatools.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'goatools.test_data.nbt_3102' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'goatools.test_data.nbt_3102' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'goatools.test_data.nbt_3102' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'goatools.test_data.nbt_3102' to be distributed and are already explicitly excluding 'goatools.test_data.nbt_3102' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) UPDATING build/lib/goatools/_version.py set build/lib/goatools/_version.py to 'v1.1.6' running build_scripts running install_lib creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/_version.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/associations.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/base.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/evidence_codes.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/go_enrichment.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/go_search.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/godag_obosm.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/godag_plot.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/godag_small.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/mapslim.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/multiple_testing.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/nt_utils.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/obo_parser.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/obo_tasks.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/pvalcalc.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/randseed.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/ratio.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/semantic.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/statsdescribe.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/utils.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/compare_gos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/docopt_parse.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/find_enrichment.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/gos_get.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/gosubdag_plot.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/grouped.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/ncbi_gene_results_to_python.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/prt_terms.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/wr_hierarchy.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/cli/wr_sections.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli copying build/lib/goatools/wr_tbl.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools copying build/lib/goatools/wr_tbl_class.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/consts.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/go_tasks.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/obo_optional_attributes.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/prtfncs.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/prttime.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/relationship_combos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/relationship_str.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/reldepth.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag copying build/lib/goatools/godag/typedef.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_edges.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_most_specific.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_paths.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_tasks.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/godag_rcnt.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/godag_rcnt_init.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/gosubdag.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/gosubdag_init.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/utils.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go2color.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go_edge.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go_name_shorten.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go_node.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/goea_results.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/gosubdag_plot.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/plot.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt copying build/lib/goatools/gosubdag/rpt/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt copying build/lib/goatools/gosubdag/rpt/wr_xlsx.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt copying build/lib/goatools/gosubdag/rpt/write_hierarchy.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/checks.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gafs.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/sorter.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/godag_timed.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/nature3102_goea.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data copying build/lib/goatools/test_data/wr_subobo.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/data2018_07_find_enrichment.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/dvk2018_genefamilyclusters.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/gjoneska_pfenning.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/cli copying build/lib/goatools/test_data/cli/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/cli copying build/lib/goatools/test_data/cli/find_enrichment_dflts.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/cli creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/README.md -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102 creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt copying build/lib/goatools/rpt/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt copying build/lib/goatools/rpt/goea_nt_xfrm.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt copying build/lib/goatools/rpt/nts_xfrm.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt copying build/lib/goatools/rpt/prtfmt.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt copying build/lib/goatools/rpt/rpt_lev_depth.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt copying build/lib/goatools/rpt/write_hierarchy_base.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/annoreader_base.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/broad_gos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/dnld_ebi_goa.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/eco2group.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/factory.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/gaf_reader.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/genetogo_reader.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/gpad_reader.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/idtogos_reader.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/opts.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno copying build/lib/goatools/anno/update_association.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_gaf.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_genetogo.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_gpad.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_idtogos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/utils.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/extension.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/extensions.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/factory.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/goea copying build/lib/goatools/goea/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/goea copying build/lib/goatools/goea/go_enrichment_ns.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/goea creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/aart_geneproducts_all.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/aart_geneproducts_one.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/colors.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprdflts.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprobj.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprobj_init.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprplt.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/hdrgos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/plotobj.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/read_goids.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/sorter.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/sorter_gos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/sorter_nts.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/tasks.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/utils.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/wr_sections.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper copying build/lib/goatools/grouper/wrxlsx.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers copying build/lib/goatools/parsers/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers copying build/lib/goatools/parsers/david_chart.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers copying build/lib/goatools/parsers/ncbi_gene_file_reader.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim copying build/lib/goatools/semsim/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim creating /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise copying build/lib/goatools/semsim/termwise/__init__.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise copying build/lib/goatools/semsim/termwise/dag_a.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise copying build/lib/goatools/semsim/termwise/wang.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/_version.py to _version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/associations.py to associations.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/base.py to base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/evidence_codes.py to evidence_codes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/go_enrichment.py to go_enrichment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/go_search.py to go_search.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag_obosm.py to godag_obosm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag_plot.py to godag_plot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag_small.py to godag_small.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/mapslim.py to mapslim.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/multiple_testing.py to multiple_testing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/nt_utils.py to nt_utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/obo_parser.py to obo_parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/obo_tasks.py to obo_tasks.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/pvalcalc.py to pvalcalc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/randseed.py to randseed.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/ratio.py to ratio.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semantic.py to semantic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/statsdescribe.py to statsdescribe.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/compare_gos.py to compare_gos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/docopt_parse.py to docopt_parse.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/find_enrichment.py to find_enrichment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/gos_get.py to gos_get.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/gosubdag_plot.py to gosubdag_plot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/grouped.py to grouped.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/ncbi_gene_results_to_python.py to ncbi_gene_results_to_python.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/prt_terms.py to prt_terms.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/wr_hierarchy.py to wr_hierarchy.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/cli/wr_sections.py to wr_sections.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/wr_tbl.py to wr_tbl.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/wr_tbl_class.py to wr_tbl_class.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/consts.py to consts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/go_tasks.py to go_tasks.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/obo_optional_attributes.py to obo_optional_attributes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/prtfncs.py to prtfncs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/prttime.py to prttime.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/relationship_combos.py to relationship_combos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/relationship_str.py to relationship_str.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/reldepth.py to reldepth.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/godag/typedef.py to typedef.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/go_edges.py to go_edges.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/go_most_specific.py to go_most_specific.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/go_paths.py to go_paths.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/go_tasks.py to go_tasks.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/godag_rcnt.py to godag_rcnt.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/godag_rcnt_init.py to godag_rcnt_init.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/gosubdag.py to gosubdag.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/gosubdag_init.py to gosubdag_init.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/go2color.py to go2color.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/go_edge.py to go_edge.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/go_name_shorten.py to go_name_shorten.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/go_node.py to go_node.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/goea_results.py to goea_results.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/gosubdag_plot.py to gosubdag_plot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/plot/plot.py to plot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt/wr_xlsx.py to wr_xlsx.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/gosubdag/rpt/write_hierarchy.py to write_hierarchy.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/checks.py to checks.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gafs.py to gafs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/genes_NCBI_10090_All.py to genes_NCBI_10090_All.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/genes_NCBI_10090_ProteinCoding.py to genes_NCBI_10090_ProteinCoding.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/genes_NCBI_7227_ProteinCoding.py to genes_NCBI_7227_ProteinCoding.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/genes_NCBI_9606_All.py to genes_NCBI_9606_All.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/genes_NCBI_9606_ProteinCoding.py to genes_NCBI_9606_ProteinCoding.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_2015_ensmusg2symbol.py to gjoneska_2015_ensmusg2symbol.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_goea_consistent_decrease.py to gjoneska_goea_consistent_decrease.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_goea_consistent_increase.py to gjoneska_goea_consistent_increase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_goea_late_decrease.py to gjoneska_goea_late_decrease.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_goea_late_increase.py to gjoneska_goea_late_increase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sorter.py to sorter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_goea_transient_decrease.py to gjoneska_goea_transient_decrease.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/gjoneska_goea_transient_increase.py to gjoneska_goea_transient_increase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/godag_timed.py to godag_timed.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nature3102_goea.py to nature3102_goea.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/wr_subobo.py to wr_subobo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections/data2018_07_find_enrichment.py to data2018_07_find_enrichment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections/dvk2018_genefamilyclusters.py to dvk2018_genefamilyclusters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/sections/gjoneska_pfenning.py to gjoneska_pfenning.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/cli/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/cli/find_enrichment_dflts.py to find_enrichment_dflts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/test_data/nbt_3102/symbol2geneid.py to symbol2geneid.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt/goea_nt_xfrm.py to goea_nt_xfrm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt/nts_xfrm.py to nts_xfrm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt/prtfmt.py to prtfmt.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt/rpt_lev_depth.py to rpt_lev_depth.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/rpt/write_hierarchy_base.py to write_hierarchy_base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/annoreader_base.py to annoreader_base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/broad_gos.py to broad_gos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/dnld_ebi_goa.py to dnld_ebi_goa.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/eco2group.py to eco2group.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/factory.py to factory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/gaf_reader.py to gaf_reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/genetogo_reader.py to genetogo_reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/gpad_reader.py to gpad_reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/idtogos_reader.py to idtogos_reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/opts.py to opts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/update_association.py to update_association.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init/reader_gaf.py to reader_gaf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init/reader_genetogo.py to reader_genetogo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init/reader_gpad.py to reader_gpad.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init/reader_idtogos.py to reader_idtogos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/init/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions/extension.py to extension.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions/extensions.py to extensions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/anno/extensions/factory.py to factory.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/goea/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/goea/go_enrichment_ns.py to go_enrichment_ns.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/aart_geneproducts_all.py to aart_geneproducts_all.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/aart_geneproducts_one.py to aart_geneproducts_one.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/colors.py to colors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/grprdflts.py to grprdflts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/grprobj.py to grprobj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/grprobj_init.py to grprobj_init.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/grprplt.py to grprplt.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/hdrgos.py to hdrgos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/plotobj.py to plotobj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/read_goids.py to read_goids.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/sorter.py to sorter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/sorter_gos.py to sorter_gos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/sorter_nts.py to sorter_nts.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/tasks.py to tasks.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/wr_sections.py to wr_sections.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/grouper/wrxlsx.py to wrxlsx.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers/david_chart.py to david_chart.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/parsers/ncbi_gene_file_reader.py to ncbi_gene_file_reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise/dag_a.py to dag_a.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools/semsim/termwise/wang.py to wang.cpython-311.pyc writing byte-compilation script '/tmp/tmprkbft88o.py' /usr/local/bin/python3.11 /tmp/tmprkbft88o.py removing /tmp/tmprkbft88o.py running install_egg_info Copying goatools.egg-info to /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/lib/python3.11/site-packages/goatools-1.1.6-py3.11.egg-info running install_scripts copying build/scripts-3.11/compare_gos.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/fetch_associations.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/find_enrichment.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/go_plot.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/map_to_slim.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/ncbi_gene_results_to_python.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/plot_go_term.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/prt_terms.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/wr_hier.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin copying build/scripts-3.11/wr_sections.py -> /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/compare_gos.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/fetch_associations.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/find_enrichment.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/go_plot.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/map_to_slim.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/ncbi_gene_results_to_python.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/plot_go_term.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/prt_terms.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/wr_hier.py to 755 changing mode of /wrkdirs/usr/ports/biology/py-goatools/work-py311/stage/usr/local/bin/wr_sections.py to 755 writing list of installed files to '/wrkdirs/usr/ports/biology/py-goatools/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-06-04T07:02:46+0000' 'PKG_NOTE_ports_top_git_hash=a8b187544' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a8b187544' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.4' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-goatools-1.1.6_3 ===> Building py311-goatools-1.1.6_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-goatools-1.1.6_3 build of biology/py-goatools@py311 | py311-goatools-1.1.6_3 ended at Thu Jun 4 16:25:11 JST 2026 build time: 00:24:01