=>> Building science/py-mmtf-python build started at Sat May 23 12:19:00 JST 2026 port directory: /usr/ports/science/py-mmtf-python package name: py311-mmtf-python-1.1.3_3 building for: FreeBSD curamd64-setuptools-job-02 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 718 May 2 10:23 /usr/ports/science/py-mmtf-python/Makefile Ports top last git commit: a8b187544 Ports top unclean checkout: yes Port dir last git commit: a8b187544 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4 Host OSVERSION: 1600018 Jail OSVERSION: 1600018 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600018 UNAME_v=FreeBSD 16.0-CURRENT 1600018 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4 MASTERMNT=/usr/local/poudriere/data/.m/curamd64-setuptools/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/curamd64-setuptools/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=curamd64-setuptools SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/curamd64-setuptools/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mmtf-python" EXAMPLESDIR="share/examples/mmtf-python" DATADIR="share/mmtf-python" WWWDIR="www/mmtf-python" ETCDIR="etc/mmtf-python" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mmtf-python DOCSDIR=/usr/local/share/doc/mmtf-python EXAMPLESDIR=/usr/local/share/examples/mmtf-python WWWDIR=/usr/local/www/mmtf-python ETCDIR=/usr/local/etc/mmtf-python --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 12099 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License APACHE20 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-mmtf-python-1.1.3_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [curamd64-setuptools-job-02] Installing pkg-2.7.5... [curamd64-setuptools-job-02] Extracting pkg-2.7.5: .......... done ===> py311-mmtf-python-1.1.3_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-mmtf-python-1.1.3_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user => rcsb-mmtf-python-v1.1.3_GH0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://codeload.github.com/rcsb/mmtf-python/tar.gz/v1.1.3?dummy=/rcsb-mmtf-python-v1.1.3_GH0.tar.gz fetch: https://codeload.github.com/rcsb/mmtf-python/tar.gz/v1.1.3?dummy=/rcsb-mmtf-python-v1.1.3_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rcsb/mmtf-python/tar.gz/v1.1.3?dummy=/rcsb-mmtf-python-v1.1.3_GH0.tar.gz: size of remote file is not known rcsb-mmtf-python-v1.1.3_GH0.tar.gz 45 kB 101 MBps 00s ===> Fetching all distfiles required by py311-mmtf-python-1.1.3_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py311-mmtf-python-1.1.3_3 for building => SHA256 Checksum OK for rcsb-mmtf-python-v1.1.3_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py311-mmtf-python-1.1.3_3 for building ===> Extracting for py311-mmtf-python-1.1.3_3 => SHA256 Checksum OK for rcsb-mmtf-python-v1.1.3_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-mmtf-python-1.1.3_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-mmtf-python-1.1.3_3 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-81.0.0.pkg [curamd64-setuptools-job-02] Installing py311-setuptools-81.0.0... [curamd64-setuptools-job-02] `-- Installing py311-more-itertools-10.6.0... [curamd64-setuptools-job-02] | `-- Installing python311-3.11.15_2... [curamd64-setuptools-job-02] | | `-- Installing gettext-runtime-1.0... [curamd64-setuptools-job-02] | | `-- Installing indexinfo-0.3.1_1... [curamd64-setuptools-job-02] | | `-- Extracting indexinfo-0.3.1_1: .... done [curamd64-setuptools-job-02] | | `-- Extracting gettext-runtime-1.0: .......... done [curamd64-setuptools-job-02] | | `-- Installing libffi-3.5.1... [curamd64-setuptools-job-02] | | `-- Extracting libffi-3.5.1: .......... done [curamd64-setuptools-job-02] | | `-- Installing mpdecimal-4.0.1... [curamd64-setuptools-job-02] | | `-- Extracting mpdecimal-4.0.1: .......... done [curamd64-setuptools-job-02] | | `-- Installing openssl-3.0.20,1... [curamd64-setuptools-job-02] | | `-- Extracting openssl-3.0.20,1: .......... done [curamd64-setuptools-job-02] | | `-- Installing readline-8.3.3... [curamd64-setuptools-job-02] | | `-- Extracting readline-8.3.3: .......... done [curamd64-setuptools-job-02] | `-- Extracting python311-3.11.15_2: .......... done [curamd64-setuptools-job-02] `-- Extracting py311-more-itertools-10.6.0: .......... done [curamd64-setuptools-job-02] `-- Installing py311-packaging-26.2... [curamd64-setuptools-job-02] `-- Extracting py311-packaging-26.2: .......... done [curamd64-setuptools-job-02] `-- Installing py311-wheel-0.47.0... [curamd64-setuptools-job-02] `-- Extracting py311-wheel-0.47.0: .......... done [curamd64-setuptools-job-02] Extracting py311-setuptools-81.0.0: .......... done ===== Message from python311-3.11.15_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-mmtf-python-1.1.3_3 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-mmtf-python-1.1.3_3 ===> py311-mmtf-python-1.1.3_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-mmtf-python-1.1.3_3 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() ['mmtf', 'mmtf.api', 'mmtf.codecs', 'mmtf.converters', 'mmtf.tests', 'mmtf.utils', 'mmtf.codecs.decoders', 'mmtf.codecs.encoders'] running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-mmtf-python-1.1.3_3 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() ['mmtf', 'mmtf.api', 'mmtf.codecs', 'mmtf.converters', 'mmtf.tests', 'mmtf.utils', 'mmtf.codecs.decoders', 'mmtf.codecs.encoders'] running build running build_py creating build/lib/mmtf copying mmtf/__init__.py -> build/lib/mmtf creating build/lib/mmtf/api copying mmtf/api/__init__.py -> build/lib/mmtf/api copying mmtf/api/default_api.py -> build/lib/mmtf/api copying mmtf/api/mmtf_reader.py -> build/lib/mmtf/api copying mmtf/api/mmtf_writer.py -> build/lib/mmtf/api creating build/lib/mmtf/codecs copying mmtf/codecs/__init__.py -> build/lib/mmtf/codecs copying mmtf/codecs/codecs.py -> build/lib/mmtf/codecs copying mmtf/codecs/default_codec.py -> build/lib/mmtf/codecs creating build/lib/mmtf/converters copying mmtf/converters/__init__.py -> build/lib/mmtf/converters copying mmtf/converters/converters.py -> build/lib/mmtf/converters copying mmtf/converters/numpy_converters.py -> build/lib/mmtf/converters creating build/lib/mmtf/tests copying mmtf/tests/__init__.py -> build/lib/mmtf/tests copying mmtf/tests/codec_tests.py -> build/lib/mmtf/tests creating build/lib/mmtf/utils copying mmtf/utils/__init__.py -> build/lib/mmtf/utils copying mmtf/utils/codec_utils.py -> build/lib/mmtf/utils copying mmtf/utils/constants.py -> build/lib/mmtf/utils copying mmtf/utils/decoder_utils.py -> build/lib/mmtf/utils creating build/lib/mmtf/codecs/decoders copying mmtf/codecs/decoders/__init__.py -> build/lib/mmtf/codecs/decoders copying mmtf/codecs/decoders/decoders.py -> build/lib/mmtf/codecs/decoders copying mmtf/codecs/decoders/numpy_decoders.py -> build/lib/mmtf/codecs/decoders creating build/lib/mmtf/codecs/encoders copying mmtf/codecs/encoders/__init__.py -> build/lib/mmtf/codecs/encoders copying mmtf/codecs/encoders/encoders.py -> build/lib/mmtf/codecs/encoders =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-mmtf-python-1.1.3_3 depends on package: py311-msgpack>=1.0.0 - not found ===> Installing existing package /packages/All/py311-msgpack-1.1.2.pkg [curamd64-setuptools-job-02] Installing py311-msgpack-1.1.2... [curamd64-setuptools-job-02] Extracting py311-msgpack-1.1.2: .......... done ===> py311-mmtf-python-1.1.3_3 depends on package: py311-msgpack>=1.0.0 - found ===> Returning to build of py311-mmtf-python-1.1.3_3 ===> py311-mmtf-python-1.1.3_3 depends on package: py311-numpy1>=1.16 - not found ===> Installing existing package /packages/All/py311-numpy1-1.26.4_3.pkg [curamd64-setuptools-job-02] Installing py311-numpy1-1.26.4_3... [curamd64-setuptools-job-02] `-- Installing gcc14-14.2.0_4... [curamd64-setuptools-job-02] | `-- Installing binutils-2.44,1... [curamd64-setuptools-job-02] | | `-- Installing zstd-1.5.7_1... [curamd64-setuptools-job-02] | | `-- Extracting zstd-1.5.7_1: .......... done [curamd64-setuptools-job-02] | `-- Extracting binutils-2.44,1: .......... done [curamd64-setuptools-job-02] | `-- Installing gmp-6.3.0... [curamd64-setuptools-job-02] | `-- Extracting gmp-6.3.0: .......... done [curamd64-setuptools-job-02] | `-- Installing mpc-1.4.1... [curamd64-setuptools-job-02] | | `-- Installing mpfr-4.2.2,1... [curamd64-setuptools-job-02] | | `-- Extracting mpfr-4.2.2,1: .......... done [curamd64-setuptools-job-02] | `-- Extracting mpc-1.4.1: .......... done [curamd64-setuptools-job-02] `-- Extracting gcc14-14.2.0_4: .......... done [curamd64-setuptools-job-02] `-- Installing openblas-0.3.30,2... [curamd64-setuptools-job-02] `-- Extracting openblas-0.3.30,2: .......... done [curamd64-setuptools-job-02] Extracting py311-numpy1-1.26.4_3: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py311-mmtf-python-1.1.3_3 depends on package: py311-numpy1>=1.16 - found ===> Returning to build of py311-mmtf-python-1.1.3_3 ===> py311-mmtf-python-1.1.3_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-mmtf-python-1.1.3_3 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() ['mmtf', 'mmtf.api', 'mmtf.codecs', 'mmtf.converters', 'mmtf.tests', 'mmtf.utils', 'mmtf.codecs.decoders', 'mmtf.codecs.encoders'] running install /usr/local/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf copying build/lib/mmtf/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api copying build/lib/mmtf/api/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api copying build/lib/mmtf/api/default_api.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api copying build/lib/mmtf/api/mmtf_reader.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api copying build/lib/mmtf/api/mmtf_writer.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs copying build/lib/mmtf/codecs/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs copying build/lib/mmtf/codecs/codecs.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs copying build/lib/mmtf/codecs/default_codec.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders copying build/lib/mmtf/codecs/decoders/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders copying build/lib/mmtf/codecs/decoders/decoders.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders copying build/lib/mmtf/codecs/decoders/numpy_decoders.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/encoders copying build/lib/mmtf/codecs/encoders/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/encoders copying build/lib/mmtf/codecs/encoders/encoders.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/encoders creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters copying build/lib/mmtf/converters/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters copying build/lib/mmtf/converters/converters.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters copying build/lib/mmtf/converters/numpy_converters.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/tests copying build/lib/mmtf/tests/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/tests copying build/lib/mmtf/tests/codec_tests.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/tests creating /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils copying build/lib/mmtf/utils/__init__.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils copying build/lib/mmtf/utils/codec_utils.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils copying build/lib/mmtf/utils/constants.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils copying build/lib/mmtf/utils/decoder_utils.py -> /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api/default_api.py to default_api.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api/mmtf_reader.py to mmtf_reader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/api/mmtf_writer.py to mmtf_writer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/codecs.py to codecs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/default_codec.py to default_codec.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders/decoders.py to decoders.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/decoders/numpy_decoders.py to numpy_decoders.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/encoders/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/codecs/encoders/encoders.py to encoders.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters/converters.py to converters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/converters/numpy_converters.py to numpy_converters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/tests/codec_tests.py to codec_tests.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils/codec_utils.py to codec_utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils/constants.py to constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf/utils/decoder_utils.py to decoder_utils.cpython-311.pyc writing byte-compilation script '/tmp/tmp51vzsgjz.py' /usr/local/bin/python3.11 /tmp/tmp51vzsgjz.py removing /tmp/tmp51vzsgjz.py running install_egg_info running egg_info creating mmtf_python.egg-info writing mmtf_python.egg-info/PKG-INFO writing dependency_links to mmtf_python.egg-info/dependency_links.txt writing requirements to mmtf_python.egg-info/requires.txt writing top-level names to mmtf_python.egg-info/top_level.txt writing manifest file 'mmtf_python.egg-info/SOURCES.txt' reading manifest file 'mmtf_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'mmtf_python.egg-info/SOURCES.txt' Copying mmtf_python.egg-info to /wrkdirs/usr/ports/science/py-mmtf-python/work-py311/stage/usr/local/lib/python3.11/site-packages/mmtf_python-1.1.3-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-mmtf-python/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-05-23T03:19:00+0000' 'PKG_NOTE_ports_top_git_hash=a8b187544' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a8b187544' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.4' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-mmtf-python-1.1.3_3 ===> Building py311-mmtf-python-1.1.3_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-mmtf-python-1.1.3_3 build of science/py-mmtf-python@py311 | py311-mmtf-python-1.1.3_3 ended at Sat May 23 12:22:35 JST 2026 build time: 00:04:38