=>> Building science/py-molmod build started at Tue Jun 2 21:32:17 JST 2026 port directory: /usr/ports/science/py-molmod package name: py311-molmod-1.4.8_3 building for: FreeBSD curamd64-setuptools-job-01 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 878 May 2 10:23 /usr/ports/science/py-molmod/Makefile Ports top last git commit: a8b187544 Ports top unclean checkout: yes Port dir last git commit: a8b187544 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4 Host OSVERSION: 1600018 Jail OSVERSION: 1600018 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600018 UNAME_v=FreeBSD 16.0-CURRENT 1600018 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4 MASTERMNT=/usr/local/poudriere/data/.m/curamd64-setuptools/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/curamd64-setuptools/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=curamd64-setuptools SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/curamd64-setuptools/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-molmod/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-molmod/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-molmod/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-molmod/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-molmod/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/molmod" EXAMPLESDIR="share/examples/molmod" DATADIR="share/molmod" WWWDIR="www/molmod" ETCDIR="etc/molmod" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/molmod DOCSDIR=/usr/local/share/doc/molmod EXAMPLESDIR=/usr/local/share/examples/molmod WWWDIR=/usr/local/www/molmod ETCDIR=/usr/local/etc/molmod --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 12099 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3+ accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-molmod-1.4.8_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [curamd64-setuptools-job-01] Installing pkg-2.7.5... [curamd64-setuptools-job-01] Extracting pkg-2.7.5: .......... done ===> py311-molmod-1.4.8_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-molmod-1.4.8_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3+ accepted by the user => molmod-1.4.8.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/m/molmod/molmod-1.4.8.tar.gz molmod-1.4.8.tar.gz 1659 kB 4578 kBps 00s ===> Fetching all distfiles required by py311-molmod-1.4.8_3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by py311-molmod-1.4.8_3 for building => SHA256 Checksum OK for molmod-1.4.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by py311-molmod-1.4.8_3 for building ===> Extracting for py311-molmod-1.4.8_3 => SHA256 Checksum OK for molmod-1.4.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-molmod-1.4.8_3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-molmod-1.4.8_3 depends on package: py311-numpy1>=1.16 - not found ===> Installing existing package /packages/All/py311-numpy1-1.26.4_3.pkg [curamd64-setuptools-job-01] Installing py311-numpy1-1.26.4_3... [curamd64-setuptools-job-01] `-- Installing gcc14-14.2.0_4... [curamd64-setuptools-job-01] | `-- Installing binutils-2.44,1... [curamd64-setuptools-job-01] | | `-- Installing indexinfo-0.3.1_1... [curamd64-setuptools-job-01] | | `-- Extracting indexinfo-0.3.1_1: .... done [curamd64-setuptools-job-01] | | `-- Installing zstd-1.5.7_1... [curamd64-setuptools-job-01] | | `-- Extracting zstd-1.5.7_1: .......... done [curamd64-setuptools-job-01] | `-- Extracting binutils-2.44,1: .......... done [curamd64-setuptools-job-01] | `-- Installing gmp-6.3.0... [curamd64-setuptools-job-01] | `-- Extracting gmp-6.3.0: .......... done [curamd64-setuptools-job-01] | `-- Installing mpc-1.4.1... [curamd64-setuptools-job-01] | | `-- Installing mpfr-4.2.2,1... [curamd64-setuptools-job-01] | | `-- Extracting mpfr-4.2.2,1: .......... done [curamd64-setuptools-job-01] | `-- Extracting mpc-1.4.1: .......... done [curamd64-setuptools-job-01] `-- Extracting gcc14-14.2.0_4: .......... done [curamd64-setuptools-job-01] `-- Installing openblas-0.3.30,2... [curamd64-setuptools-job-01] `-- Extracting openblas-0.3.30,2: .......... done [curamd64-setuptools-job-01] `-- Installing python311-3.11.15_2... [curamd64-setuptools-job-01] | `-- Installing gettext-runtime-1.0... [curamd64-setuptools-job-01] | `-- Extracting gettext-runtime-1.0: .......... done [curamd64-setuptools-job-01] | `-- Installing libffi-3.5.1... [curamd64-setuptools-job-01] | `-- Extracting libffi-3.5.1: .......... done [curamd64-setuptools-job-01] | `-- Installing mpdecimal-4.0.1... [curamd64-setuptools-job-01] | `-- Extracting mpdecimal-4.0.1: .......... done [curamd64-setuptools-job-01] | `-- Installing openssl-3.0.20,1... [curamd64-setuptools-job-01] | `-- Extracting openssl-3.0.20,1: .......... done [curamd64-setuptools-job-01] | `-- Installing readline-8.3.3... [curamd64-setuptools-job-01] | `-- Extracting readline-8.3.3: .......... done [curamd64-setuptools-job-01] `-- Extracting python311-3.11.15_2: .......... done [curamd64-setuptools-job-01] Extracting py311-numpy1-1.26.4_3: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.15_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-molmod-1.4.8_3 depends on package: py311-numpy1>=1.16 - found ===> Returning to build of py311-molmod-1.4.8_3 ===> py311-molmod-1.4.8_3 depends on package: py311-cython0>=0.29.37<3 - not found ===> Installing existing package /packages/All/py311-cython0-0.29.37.pkg [curamd64-setuptools-job-01] Installing py311-cython0-0.29.37... [curamd64-setuptools-job-01] Extracting py311-cython0-0.29.37: .......... done ===== Message from py311-cython0-0.29.37: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Legacy version. Does not work with newer Python versions. Use lang/cython instead. It is scheduled to be removed on or after 2026-06-30. ===> py311-molmod-1.4.8_3 depends on package: py311-cython0>=0.29.37<3 - found ===> Returning to build of py311-molmod-1.4.8_3 ===> py311-molmod-1.4.8_3 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-81.0.0.pkg [curamd64-setuptools-job-01] Installing py311-setuptools-81.0.0... [curamd64-setuptools-job-01] `-- Installing py311-more-itertools-10.6.0... [curamd64-setuptools-job-01] `-- Extracting py311-more-itertools-10.6.0: .......... done [curamd64-setuptools-job-01] `-- Installing py311-packaging-26.2... [curamd64-setuptools-job-01] `-- Extracting py311-packaging-26.2: .......... done [curamd64-setuptools-job-01] `-- Installing py311-wheel-0.47.0... [curamd64-setuptools-job-01] `-- Extracting py311-wheel-0.47.0: .......... done [curamd64-setuptools-job-01] Extracting py311-setuptools-81.0.0: .......... done ===> py311-molmod-1.4.8_3 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-molmod-1.4.8_3 ===> py311-molmod-1.4.8_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-molmod-1.4.8_3 /usr/local/lib/python3.11/site-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() Trying to get the version from git describe Trying to get the version from {} molmod/version.py Version according to molmod/version.py: 1.4.8 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-molmod-1.4.8_3 /usr/local/lib/python3.11/site-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() Trying to get the version from git describe Trying to get the version from {} molmod/version.py Version according to molmod/version.py: 1.4.8 running build running build_py creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/zmatrix.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecules.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/quaternions.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/toyff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/pairff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/clusters.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/randomize.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/units.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecular_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/minimizer.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/constants.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/periodic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/symmetry.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/transformations.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/ic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/vectors.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/utils.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/binning.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/similarity.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/version.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/isotopes.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/unit_cells.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/bonds.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/log.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_units.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_examples.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_symmetry.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_ic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_similarity.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_data.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_vectors.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_clusters.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_zmatrix.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/common.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_pairff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_molecular_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_toyff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_minimizer.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_binning.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_unit_cells.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_quaternions.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_log.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_transformations.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_utils.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_molecules.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_randomize.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cube.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/crystal.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cml.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/xyz.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/dlpoly.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/common.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/sdf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/atrj.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/number_state.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/gromacs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/psf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/fchk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cp2k.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/chk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/lammps.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/gamess.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cpmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/pdb.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_psf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_atrj.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cp2k.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_gromacs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_dlpoly.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_gamess.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cpmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cube.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_chk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_lammps.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_pdb.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_number_state.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_sdf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_xyz.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_crystal.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_fchk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cml.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test running egg_info writing molmod.egg-info/PKG-INFO writing dependency_links to molmod.egg-info/dependency_links.txt writing requirements to molmod.egg-info/requires.txt writing top-level names to molmod.egg-info/top_level.txt reading manifest file 'molmod.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching 'ext.c' found under directory 'molmod' adding license file 'LICENSE.txt' writing manifest file 'molmod.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'molmod.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'molmod.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'molmod.data' to be distributed and are already explicitly excluding 'molmod.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'molmod.data.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'molmod.data.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'molmod.data.test' to be distributed and are already explicitly excluding 'molmod.data.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'molmod.examples' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'molmod.examples' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'molmod.examples' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'molmod.examples' to be distributed and are already explicitly excluding 'molmod.examples' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying molmod/common.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/common.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/ext.pyx -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/ff.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/ff.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/ff.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/graphs.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/graphs.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/graphs.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecules.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecules.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecules.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/similarity.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/similarity.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/similarity.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/unit_cells.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/unit_cells.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/unit_cells.pxd -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/bonds.csv -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/bonds.ods -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/mass.mas03 -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/nubtab03.asc -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/periodic.csv -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/periodic.ods -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data copying molmod/data/toyff_angles.txt -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/1LJL_Cys10.cml -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/5ringOH.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/CID_22898828.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/PCGamess_PUNCH -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_31646545.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_31646548.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_40363570.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_40363571.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_41893278.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_41893280.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_54258192.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_55127927.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_55488598.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/SID_56274343.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/alanine.cube -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/argon.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/bartek.atrj -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/benzene.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/butane.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/caplayer.cml -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/crystal_api.out -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/cyclopentane.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/dinitrogen.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/dlpoly_HISTORY -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/dlpoly_OUTPUT -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/dopamine.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/ethane.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/ethene.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/example.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/formol.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/funny.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/il2.pdb -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/lammps_dump.txt -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/lau.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/octane.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/oh3siozroh3.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_5ring10T.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_5ring12T.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_6_6ring.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/opt_6ring.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/pentapeptide.psf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/precursor.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/probes.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/tea.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/tetra.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf.psf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf_64.cell -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/thf_single.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/tpa.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/water.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/water2.gro -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/water_md.inp -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test copying molmod/data/test/zr4o8-3.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/a_reaction.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/b_chbond.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/c_h2rot.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/a_convert.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/b_com.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/c_carbon.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/d_size.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/e_shape.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/a_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/c_distances.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/propane.xyz -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns running build_ext cythoning molmod/ext.pyx to molmod/ext.c /usr/local/lib/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /wrkdirs/usr/ports/science/py-molmod/work-py311/molmod-1.4.8/molmod/ext.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'molmod.ext' extension creating build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/common.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/common.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/ext.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ext.o In file included from molmod/ext.c:752: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929: /usr/local/lib/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^ molmod/ext.c:6866:38: warning: passing 'const long *' to parameter of type 'long *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] 6866 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ molmod/similarity.h:30:46: note: passing argument to parameter 'labels' here 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); | ^ molmod/ext.c:7095:41: warning: passing 'const double *' to parameter of type 'double *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] 7095 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ molmod/similarity.h:31:51: note: passing argument to parameter 'distance_matrix' here 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); | ^ 3 warnings generated. cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/ff.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ff.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/graphs.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/graphs.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/molecules.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecules.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/similarity.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/similarity.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c molmod/unit_cells.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/unit_cells.o molmod/unit_cells.c:114:21: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^ molmod/unit_cells.c:114:21: note: use function 'labs' instead 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^~~ | labs molmod/unit_cells.c:114:31: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^ molmod/unit_cells.c:114:31: note: use function 'labs' instead 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^~~ | labs molmod/unit_cells.c:114:41: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^ molmod/unit_cells.c:114:41: note: use function 'labs' instead 114 | sum = abs(j0) + abs(j1) + abs(j2); | ^~~ | labs molmod/unit_cells.c:156:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^ molmod/unit_cells.c:156:20: note: use function 'fabs' instead 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^~~ | fabs molmod/unit_cells.c:156:54: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^ molmod/unit_cells.c:156:54: note: use function 'fabs' instead 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^~~ | fabs molmod/unit_cells.c:156:88: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^ molmod/unit_cells.c:156:88: note: use function 'fabs' instead 156 | if ((abs(frac[0] - i0) < 1.000001) && (abs(frac[1] - i1) < 1.000001) && (abs(frac[2] - i2) < 1.000001)) { | ^~~ | fabs 6 warnings generated. cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/common.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ext.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ff.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/graphs.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecules.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/similarity.o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/unit_cells.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ext.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-molmod-1.4.8_3 depends on package: py311-numpy1>=1.16 - found ===> py311-molmod-1.4.8_3 depends on package: py311-future>0 - not found ===> Installing existing package /packages/All/py311-future-0.18.3_1.pkg [curamd64-setuptools-job-01] Installing py311-future-0.18.3_1... [curamd64-setuptools-job-01] Extracting py311-future-0.18.3_1: .......... done ===> py311-molmod-1.4.8_3 depends on package: py311-future>0 - found ===> Returning to build of py311-molmod-1.4.8_3 ===> py311-molmod-1.4.8_3 depends on package: py311-cython0>=0.29.37<3 - found ===> py311-molmod-1.4.8_3 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-molmod-1.4.8_3 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() Trying to get the version from git describe Trying to get the version from {} molmod/version.py Version according to molmod/version.py: 1.4.8 running install /usr/local/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying molmod/zmatrix.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecules.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/quaternions.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/toyff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/pairff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/clusters.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/randomize.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/units.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/molecular_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/minimizer.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/constants.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/periodic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/symmetry.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/transformations.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/ic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/vectors.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/utils.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/binning.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/similarity.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/version.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/isotopes.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/unit_cells.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/bonds.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/log.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod copying molmod/test/test_units.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_examples.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_symmetry.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_ic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_similarity.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_data.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_vectors.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_clusters.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_zmatrix.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/common.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_pairff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_molecular_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_toyff.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_minimizer.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_binning.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_unit_cells.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_quaternions.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_log.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_transformations.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_utils.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_molecules.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/test/test_randomize.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test copying molmod/io/cube.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/crystal.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cml.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/xyz.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/dlpoly.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/common.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/sdf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/atrj.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/number_state.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/gromacs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/psf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/fchk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cp2k.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/chk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/lammps.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/gamess.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/cpmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/pdb.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io copying molmod/io/test/test_psf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_atrj.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cp2k.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_gromacs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_dlpoly.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_gamess.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cpmd.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cube.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_chk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_lammps.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_pdb.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_number_state.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_sdf.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_xyz.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_crystal.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_fchk.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test copying molmod/io/test/test_cml.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test running egg_info writing molmod.egg-info/PKG-INFO writing dependency_links to molmod.egg-info/dependency_links.txt writing requirements to molmod.egg-info/requires.txt writing top-level names to molmod.egg-info/top_level.txt reading manifest file 'molmod.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'molmod.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'molmod.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'molmod.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'molmod.data' to be distributed and are already explicitly excluding 'molmod.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'molmod.data.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'molmod.data.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'molmod.data.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'molmod.data.test' to be distributed and are already explicitly excluding 'molmod.data.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'molmod.examples' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'molmod.examples' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'molmod.examples' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'molmod.examples' to be distributed and are already explicitly excluding 'molmod.examples' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying molmod/examples/000_units/a_reaction.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/b_chbond.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/000_units/c_h2rot.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units copying molmod/examples/001_molecules/a_convert.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/b_com.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/c_carbon.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/d_size.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/001_molecules/e_shape.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules copying molmod/examples/002_graphs/a_graphs.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/c_distances.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns running build_ext skipping 'molmod/ext.c' Cython extension (up-to-date) running install_lib creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/zmatrix.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecules.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/quaternions.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/toyff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/pairff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/clusters.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/randomize.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/units.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecular_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/minimizer.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/constants.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/periodic.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/symmetry.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/transformations.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ic.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/vectors.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/utils.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/binning.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/similarity.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/version.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/isotopes.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/cube.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/crystal.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/cml.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/xyz.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/dlpoly.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/common.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/sdf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/atrj.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/number_state.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/gromacs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/psf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/fchk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/cp2k.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/chk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/lammps.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/gamess.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/cpmd.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/pdb.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_psf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_atrj.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_cp2k.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_gromacs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_dlpoly.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_gamess.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_cpmd.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_cube.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_chk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_lammps.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_pdb.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_number_state.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_sdf.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_xyz.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_crystal.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_fchk.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/io/test/test_cml.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/unit_cells.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/bonds.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/log.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_units.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_examples.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_symmetry.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_ic.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_similarity.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_data.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_vectors.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_clusters.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_zmatrix.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/common.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_pairff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_molecular_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_toyff.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_minimizer.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_binning.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_unit_cells.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_quaternions.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/__init__.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_log.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_transformations.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_utils.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_molecules.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/test/test_randomize.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/common.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/common.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ext.pyx -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ff.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ff.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ff.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/graphs.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/graphs.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/graphs.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecules.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecules.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/molecules.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/similarity.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/similarity.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/similarity.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/unit_cells.c -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/unit_cells.h -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/unit_cells.pxd -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/bonds.csv -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/bonds.ods -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/mass.mas03 -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/nubtab03.asc -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/periodic.csv -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/periodic.ods -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/toyff_angles.txt -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/1LJL_Cys10.cml -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/1TOH.b3lyp.fchk -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/1TOH.b3lyp.trim.fchk -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/5ringOH.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/CID_22898828.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/PCGamess_PUNCH -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_31646545.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_31646548.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_40363570.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_40363571.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_41893278.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_41893280.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_54258192.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_55127927.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_55488598.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/SID_56274343.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/TRAJECTORY_H2_CPMD -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/alanine.cube -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/argon.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/bartek.atrj -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/benzene.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/butane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/caplayer.cml -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/crystal_api.out -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/cyclopentane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/dinitrogen.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/dlpoly_HISTORY -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/dlpoly_HISTORY_an2 -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/dlpoly_OUTPUT -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/dopamine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/ethane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/ethene.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/ethene_ethyl_trans.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/example.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/formol.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/funny.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/h3zrosihohosioh3.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/il2.pdb -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/lammps_dump.txt -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/lau.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/octane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/oh3siozroh3.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/opt_5ring10T.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/opt_5ring12T.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/opt_6_6ring.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/opt_6ring.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/pentapeptide.psf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/precursor.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/probes.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/tea.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/tetra.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/thf.psf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/thf.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/thf_64.cell -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/thf_single.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/tpa.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/water.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/water2.gro -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/water_md.inp -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/data/test/zr4o8-3.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/data/test creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units/a_reaction.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units/b_chbond.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/000_units/c_h2rot.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules/a_convert.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules/b_com.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules/c_carbon.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules/d_size.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules/e_shape.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/001_molecules/ibuprofen.sdf -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs/a_graphs.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs/b_neighbors.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs/c_distances.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs/caffeine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs/d_symmetries.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/002_graphs/ethanol.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/a_bond_length.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/b_bending_angles.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/dopamine.fchk -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/dopamine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/003_internal_coordinates/propane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates creating /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns/a_propane_types.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns/b_dopamine_types.py -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns/dopamine.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns/mfi_fragment.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/examples/004_patterns/propane.xyz -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/molmod/ext.cpython-311.so -> /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/zmatrix.py to zmatrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/molecules.py to molecules.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/quaternions.py to quaternions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/toyff.py to toyff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/pairff.py to pairff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/clusters.py to clusters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/randomize.py to randomize.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/units.py to units.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/molecular_graphs.py to molecular_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/minimizer.py to minimizer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/constants.py to constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/periodic.py to periodic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/symmetry.py to symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/transformations.py to transformations.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/graphs.py to graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/ic.py to ic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/vectors.py to vectors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/binning.py to binning.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/similarity.py to similarity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/version.py to version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/isotopes.py to isotopes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cube.py to cube.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/crystal.py to crystal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cml.py to cml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/xyz.py to xyz.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/dlpoly.py to dlpoly.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/sdf.py to sdf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/atrj.py to atrj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/number_state.py to number_state.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/gromacs.py to gromacs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/psf.py to psf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/fchk.py to fchk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cp2k.py to cp2k.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/chk.py to chk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/lammps.py to lammps.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/gamess.py to gamess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/cpmd.py to cpmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/pdb.py to pdb.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_psf.py to test_psf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_atrj.py to test_atrj.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cp2k.py to test_cp2k.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_gromacs.py to test_gromacs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_dlpoly.py to test_dlpoly.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_gamess.py to test_gamess.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cpmd.py to test_cpmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cube.py to test_cube.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_chk.py to test_chk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_lammps.py to test_lammps.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_pdb.py to test_pdb.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_number_state.py to test_number_state.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_sdf.py to test_sdf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_xyz.py to test_xyz.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_crystal.py to test_crystal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_fchk.py to test_fchk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/io/test/test_cml.py to test_cml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/unit_cells.py to unit_cells.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/bonds.py to bonds.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/log.py to log.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_units.py to test_units.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_examples.py to test_examples.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_symmetry.py to test_symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_ic.py to test_ic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_similarity.py to test_similarity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_data.py to test_data.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_vectors.py to test_vectors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_graphs.py to test_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_clusters.py to test_clusters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_zmatrix.py to test_zmatrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_pairff.py to test_pairff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_molecular_graphs.py to test_molecular_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_toyff.py to test_toyff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_minimizer.py to test_minimizer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_binning.py to test_binning.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_unit_cells.py to test_unit_cells.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_quaternions.py to test_quaternions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_log.py to test_log.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_transformations.py to test_transformations.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_utils.py to test_utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_molecules.py to test_molecules.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/test/test_randomize.py to test_randomize.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units/a_reaction.py to a_reaction.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units/b_chbond.py to b_chbond.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/000_units/c_h2rot.py to c_h2rot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/a_convert.py to a_convert.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/b_com.py to b_com.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/c_carbon.py to c_carbon.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/d_size.py to d_size.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/001_molecules/e_shape.py to e_shape.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/a_graphs.py to a_graphs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/b_neighbors.py to b_neighbors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/c_distances.py to c_distances.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/002_graphs/d_symmetries.py to d_symmetries.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/a_bond_length.py to a_bond_length.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/b_bending_angles.py to b_bending_angles.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/c_ff_hessian.py to c_ff_hessian.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/003_internal_coordinates/d_dft_hessian.py to d_dft_hessian.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns/a_propane_types.py to a_propane_types.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod/examples/004_patterns/b_dopamine_types.py to b_dopamine_types.cpython-311.pyc writing byte-compilation script '/tmp/tmpiv370aeu.py' /usr/local/bin/python3.11 /tmp/tmpiv370aeu.py removing /tmp/tmpiv370aeu.py running install_egg_info Copying molmod.egg-info to /wrkdirs/usr/ports/science/py-molmod/work-py311/stage/usr/local/lib/python3.11/site-packages/molmod-1.4.8-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-molmod/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-06-02T12:32:17+0000' 'PKG_NOTE_ports_top_git_hash=a8b187544' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a8b187544' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.4' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-molmod-1.4.8_3 ===> Building py311-molmod-1.4.8_3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-molmod-1.4.8_3 build of science/py-molmod@py311 | py311-molmod-1.4.8_3 ended at Tue Jun 2 21:39:30 JST 2026 build time: 00:08:47