=>> Building math/py-pynauty build started at Sun May 31 18:54:34 JST 2026 port directory: /usr/ports/math/py-pynauty package name: py311-pynauty-2.8.8.1 building for: FreeBSD curamd64-setuptools-job-02 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 708 May 2 10:21 /usr/ports/math/py-pynauty/Makefile Ports top last git commit: a8b187544 Ports top unclean checkout: yes Port dir last git commit: a8b187544 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4 Host OSVERSION: 1600018 Jail OSVERSION: 1600018 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1600018 UNAME_v=FreeBSD 16.0-CURRENT 1600018 UNAME_r=16.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4 MASTERMNT=/usr/local/poudriere/data/.m/curamd64-setuptools/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/curamd64-setuptools/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=curamd64-setuptools SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/curamd64-setuptools/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311/.cache HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-pynauty/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-pynauty/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311/.cache HOME=/wrkdirs/usr/ports/math/py-pynauty/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-pynauty/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-pynauty/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pynauty" EXAMPLESDIR="share/examples/pynauty" DATADIR="share/pynauty" WWWDIR="www/pynauty" ETCDIR="etc/pynauty" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pynauty DOCSDIR=/usr/local/share/doc/pynauty EXAMPLESDIR=/usr/local/share/examples/pynauty WWWDIR=/usr/local/www/pynauty ETCDIR=/usr/local/etc/pynauty --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+= magick=7-x11 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5_mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= GAMMA INPUTMETHOD LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 12099 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pynauty-2.8.8.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [curamd64-setuptools-job-02] Installing pkg-2.7.5... [curamd64-setuptools-job-02] Extracting pkg-2.7.5: .......... done ===> py311-pynauty-2.8.8.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pynauty-2.8.8.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user => pynauty-2.8.8.1.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pynauty/pynauty-2.8.8.1.tar.gz pynauty-2.8.8.1.tar.gz 2274 kB 7930 kBps 01s ===> Fetching all distfiles required by py311-pynauty-2.8.8.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py311-pynauty-2.8.8.1 for building => SHA256 Checksum OK for pynauty-2.8.8.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py311-pynauty-2.8.8.1 for building ===> Extracting for py311-pynauty-2.8.8.1 => SHA256 Checksum OK for pynauty-2.8.8.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py311-pynauty-2.8.8.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pynauty-2.8.8.1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [curamd64-setuptools-job-02] Installing gmake-4.4.1... [curamd64-setuptools-job-02] `-- Installing gettext-runtime-1.0... [curamd64-setuptools-job-02] | `-- Installing indexinfo-0.3.1_1... [curamd64-setuptools-job-02] | `-- Extracting indexinfo-0.3.1_1: .... done [curamd64-setuptools-job-02] `-- Extracting gettext-runtime-1.0: .......... done [curamd64-setuptools-job-02] Extracting gmake-4.4.1: .......... done ===> py311-pynauty-2.8.8.1 depends on executable: gmake - found ===> Returning to build of py311-pynauty-2.8.8.1 ===> py311-pynauty-2.8.8.1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-81.0.0.pkg [curamd64-setuptools-job-02] Installing py311-setuptools-81.0.0... [curamd64-setuptools-job-02] `-- Installing py311-more-itertools-10.6.0... [curamd64-setuptools-job-02] | `-- Installing python311-3.11.15_2... [curamd64-setuptools-job-02] | | `-- Installing libffi-3.5.1... [curamd64-setuptools-job-02] | | `-- Extracting libffi-3.5.1: .......... done [curamd64-setuptools-job-02] | | `-- Installing mpdecimal-4.0.1... [curamd64-setuptools-job-02] | | `-- Extracting mpdecimal-4.0.1: .......... done [curamd64-setuptools-job-02] | | `-- Installing openssl-3.0.20,1... [curamd64-setuptools-job-02] | | `-- Extracting openssl-3.0.20,1: .......... done [curamd64-setuptools-job-02] | | `-- Installing readline-8.3.3... [curamd64-setuptools-job-02] | | `-- Extracting readline-8.3.3: .......... done [curamd64-setuptools-job-02] | `-- Extracting python311-3.11.15_2: .......... done [curamd64-setuptools-job-02] `-- Extracting py311-more-itertools-10.6.0: .......... done [curamd64-setuptools-job-02] `-- Installing py311-packaging-26.2... [curamd64-setuptools-job-02] `-- Extracting py311-packaging-26.2: .......... done [curamd64-setuptools-job-02] `-- Installing py311-wheel-0.47.0... [curamd64-setuptools-job-02] `-- Extracting py311-wheel-0.47.0: .......... done [curamd64-setuptools-job-02] Extracting py311-setuptools-81.0.0: .......... done ===== Message from python311-3.11.15_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pynauty-2.8.8.1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-pynauty-2.8.8.1 ===> py311-pynauty-2.8.8.1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py311-pynauty-2.8.8.1 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py311-pynauty-2.8.8.1 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty copying src/pynauty/__init__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty copying src/pynauty/__main__.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty copying src/pynauty/graph.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty running egg_info writing pynauty.egg-info/PKG-INFO writing dependency_links to pynauty.egg-info/dependency_links.txt writing top-level names to pynauty.egg-info/top_level.txt reading manifest file 'pynauty.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.a' found anywhere in distribution warning: no previously-included files matching '*.o' found anywhere in distribution adding license file 'COPYING' writing manifest file 'pynauty.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.doctrees' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.doctrees' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.doctrees' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.doctrees' to be distributed and are already explicitly excluding 'pynauty.docs.doctrees' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html' to be distributed and are already explicitly excluding 'pynauty.docs.html' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._modules' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._modules' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._modules' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._modules' to be distributed and are already explicitly excluding 'pynauty.docs.html._modules' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._modules.pynauty' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._modules.pynauty' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._modules.pynauty' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._modules.pynauty' to be distributed and are already explicitly excluding 'pynauty.docs.html._modules.pynauty' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._sources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._sources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._sources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._sources' to be distributed and are already explicitly excluding 'pynauty.docs.html._sources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._static' to be distributed and are already explicitly excluding 'pynauty.docs.html._static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.tests' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.tests' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.tests' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.tests' to be distributed and are already explicitly excluding 'pynauty.tests' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/pynauty/nautywrap.c -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty copying src/pynauty/nautywrap.h -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees copying src/pynauty/docs/doctrees/environment.pickle -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees copying src/pynauty/docs/doctrees/guide.doctree -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees copying src/pynauty/docs/doctrees/index.doctree -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees copying src/pynauty/docs/doctrees/install.doctree -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees copying src/pynauty/docs/doctrees/intro.doctree -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/.buildinfo -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/genindex.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/guide.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/index.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/install.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/intro.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/objects.inv -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/py-modindex.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/search.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html copying src/pynauty/docs/html/searchindex.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules copying src/pynauty/docs/html/_modules/index.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules copying src/pynauty/docs/html/_modules/pynauty.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules/pynauty copying src/pynauty/docs/html/_modules/pynauty/graph.html -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules/pynauty creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources copying src/pynauty/docs/html/_sources/guide.rst.txt -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources copying src/pynauty/docs/html/_sources/index.rst.txt -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources copying src/pynauty/docs/html/_sources/install.rst.txt -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources copying src/pynauty/docs/html/_sources/intro.rst.txt -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/basic.css -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/classic.css -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/doctools.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/documentation_options.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/file.png -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/language_data.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/minus.png -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/plus.png -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/pygments.css -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/searchtools.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/sidebar.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static copying src/pynauty/docs/html/_static/sphinx_highlight.js -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static creating build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests copying src/pynauty/tests/conftest.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests copying src/pynauty/tests/test_autgrp.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests copying src/pynauty/tests/test_isomorphic.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests copying src/pynauty/tests/test_minimal.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests running build_ext make nauty-objects /wrkdirs/usr/ports/math/py-pynauty/work-py311/.bin/make -C src -f Makefile.nauty nauty-objects make[1]: Entering directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src' cd nauty2_8_8; ./configure CFLAGS='-O4 -fPIC' checking build system type... x86_64-unknown-freebsd16.0 checking host system type... x86_64-unknown-freebsd16.0 checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for sys/wait.h that is POSIX.1 compatible... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/wait.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for pid_t... yes checking whether ftell is declared... yes checking whether popen is declared... yes checking whether fdopen is declared... yes checking whether putenv is declared... yes checking whether setenv is declared... yes checking whether malloc is declared... yes checking if compiler accepts flexible array members... 1 checking if INFINITY is declared in math.h... 1 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of void*... 8 checking size of __uint128_t... 16 checking size of unsigned __int128... 16 checking for isatty... yes checking for time... yes checking for gettimeofday... yes checking for clock_gettime... yes checking for clock... yes checking for times... yes checking for getrusage... yes checking for perror... yes checking for pipe... yes checking for wait... yes checking for popen... yes checking for putenv... yes checking for setenv... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for fseeko... yes checking for sigaction... yes checking for sigprocmask... yes checking if popcnt instruction is available and requested... 1 checking if __builtin_popcount() is supported... 1 checking if __builtin_popcountl() is supported... 1 checking if __builtin_popcountll() is supported... 1 checking if cc supports -march=native... yes CC=cc CFLAGS=-O4 -fPIC MORECFLAGS= -mpopcnt -march=native checking if lzcnt instruction is available and requested... 0 checking if __builtin_clz() is supported... 1 checking if __builtin_clzl() is supported... 1 checking if __builtin_clzll() is supported... 1 checking for getc_unlocked... yes checking for flockfile... yes checking for noreturn attribute... _Noreturn checking for thread local storage (TLS) class... _Thread_local checking for gsort... no checking for sort... sort checking if sort supports the -k switch... 1 checking if sort supports the -S switch... 1 checking for a thread-safe mkdir -p... ./install-sh -c -d checking for a BSD-compatible install... /usr/bin/install -c checking for gunzip... gunzip configure: creating ./config.status config.status: creating makefile config.status: creating nauty.h config.status: creating naututil.h config.status: creating gtools.h config.status: creating nauty.pc config.status: creating runalltests cd nauty2_8_8; make nauty.o nautil.o naugraph.o schreier.o naurng.o make[2]: Entering directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src/nauty2_8_8' cc -c -O4 -fPIC -mpopcnt -march=native -o nauty.o nauty.c cc: warning: -O4 is equivalent to -O3 [-Wdeprecated] cc -c -O4 -fPIC -mpopcnt -march=native -o nautil.o nautil.c cc: warning: -O4 is equivalent to -O3 [-Wdeprecated] cc -c -O4 -fPIC -mpopcnt -march=native -o naugraph.o naugraph.c cc: warning: -O4 is equivalent to -O3 [-Wdeprecated] cc -c -O4 -fPIC -mpopcnt -march=native -o schreier.o schreier.c cc: warning: -O4 is equivalent to -O3 [-Wdeprecated] cc -c -O4 -fPIC -mpopcnt -march=native -o naurng.o naurng.c cc: warning: -O4 is equivalent to -O3 [-Wdeprecated] make[2]: Leaving directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src/nauty2_8_8' make[1]: Leaving directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src' building 'pynauty.nautywrap' extension creating build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/src/pynauty cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/nauty2_8_8 -Isrc/pynauty -I/usr/local/include/python3.11 -c src/pynauty/nautywrap.c -o build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/src/pynauty/nautywrap.o -O4 -fPIC cc: warning: -O4 is equivalent to -O3 [-Wdeprecated] In file included from src/pynauty/nautywrap.c:17: src/nauty2_8_8/nauty.h:63:9: warning: '_FILE_OFFSET_BITS' macro redefined [-Wmacro-redefined] 63 | #define _FILE_OFFSET_BITS 0 | ^ /usr/local/include/python3.11/pyconfig.h:1771:9: note: previous definition is here 1771 | #define _FILE_OFFSET_BITS 64 | ^ 1 warning generated. cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-16.0-CURRENT-amd64-cpython-311/src/pynauty/nautywrap.o src/nauty2_8_8/nauty.o src/nauty2_8_8/nautil.o src/nauty2_8_8/naugraph.o src/nauty2_8_8/schreier.o src/nauty2_8_8/naurng.o -L/usr/local/lib -o build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/nautywrap.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pynauty-2.8.8.1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py311-pynauty-2.8.8.1 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/local/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pynauty.egg-info/PKG-INFO writing dependency_links to pynauty.egg-info/dependency_links.txt writing top-level names to pynauty.egg-info/top_level.txt reading manifest file 'pynauty.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.a' found anywhere in distribution adding license file 'COPYING' writing manifest file 'pynauty.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.doctrees' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.doctrees' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.doctrees' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.doctrees' to be distributed and are already explicitly excluding 'pynauty.docs.doctrees' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html' to be distributed and are already explicitly excluding 'pynauty.docs.html' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._modules' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._modules' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._modules' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._modules' to be distributed and are already explicitly excluding 'pynauty.docs.html._modules' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._modules.pynauty' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._modules.pynauty' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._modules.pynauty' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._modules.pynauty' to be distributed and are already explicitly excluding 'pynauty.docs.html._modules.pynauty' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._sources' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._sources' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._sources' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._sources' to be distributed and are already explicitly excluding 'pynauty.docs.html._sources' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.docs.html._static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.docs.html._static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.docs.html._static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.docs.html._static' to be distributed and are already explicitly excluding 'pynauty.docs.html._static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pynauty.tests' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pynauty.tests' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pynauty.tests' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pynauty.tests' to be distributed and are already explicitly excluding 'pynauty.tests' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/pynauty/tests/test_minimal.py -> build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests running build_ext make nauty-objects /wrkdirs/usr/ports/math/py-pynauty/work-py311/.bin/make -C src -f Makefile.nauty nauty-objects make[1]: Entering directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src' cd nauty2_8_8; make nauty.o nautil.o naugraph.o schreier.o naurng.o make[2]: Entering directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src/nauty2_8_8' make[2]: 'nauty.o' is up to date. make[2]: 'nautil.o' is up to date. make[2]: 'naugraph.o' is up to date. make[2]: 'schreier.o' is up to date. make[2]: 'naurng.o' is up to date. make[2]: Leaving directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src/nauty2_8_8' make[1]: Leaving directory '/wrkdirs/usr/ports/math/py-pynauty/work-py311/pynauty-2.8.8.1/src' running install_lib creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/__init__.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/__main__.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/graph.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/nautywrap.c -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/nautywrap.h -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/doctrees copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees/environment.pickle -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/doctrees copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees/guide.doctree -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/doctrees copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees/index.doctree -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/doctrees copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees/install.doctree -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/doctrees copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/doctrees/intro.doctree -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/doctrees creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/.buildinfo -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/genindex.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/guide.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/index.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/install.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/intro.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/objects.inv -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/py-modindex.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/search.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/searchindex.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_modules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules/index.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_modules copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules/pynauty.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_modules creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_modules/pynauty copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_modules/pynauty/graph.html -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_modules/pynauty creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_sources copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources/guide.rst.txt -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_sources copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources/index.rst.txt -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_sources copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources/install.rst.txt -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_sources copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_sources/intro.rst.txt -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_sources creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/basic.css -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/classic.css -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/doctools.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/documentation_options.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/file.png -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/language_data.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/minus.png -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/plus.png -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/pygments.css -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/searchtools.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/sidebar.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/docs/html/_static/sphinx_highlight.js -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/docs/html/_static creating /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests/conftest.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests/test_autgrp.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests/test_isomorphic.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/tests/test_minimal.py -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests copying build/lib.freebsd-16.0-CURRENT-amd64-cpython-311/pynauty/nautywrap.cpython-311.so -> /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/__main__.py to __main__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/graph.py to graph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests/conftest.py to conftest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests/test_autgrp.py to test_autgrp.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests/test_isomorphic.py to test_isomorphic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty/tests/test_minimal.py to test_minimal.cpython-311.pyc writing byte-compilation script '/tmp/tmp38dody8n.py' /usr/local/bin/python3.11 /tmp/tmp38dody8n.py removing /tmp/tmp38dody8n.py running install_egg_info Copying pynauty.egg-info to /wrkdirs/usr/ports/math/py-pynauty/work-py311/stage/usr/local/lib/python3.11/site-packages/pynauty-2.8.8.1-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/math/py-pynauty/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-05-31T09:54:34+0000' 'PKG_NOTE_ports_top_git_hash=a8b187544' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=a8b187544' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.4' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py311-pynauty-2.8.8.1 ===> Building py311-pynauty-2.8.8.1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-pynauty-2.8.8.1 build of math/py-pynauty@py311 | py311-pynauty-2.8.8.1 ended at Sun May 31 18:56:37 JST 2026 build time: 00:02:53