=>> Building biology/py-bx-python build started at Tue Jul 7 18:38:06 JST 2026 port directory: /usr/ports/biology/py-bx-python package name: py312-bx-python-0.14.0_2 building for: FreeBSD s15amd64-setuptools2-job-05 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 997 Jul 5 18:52 /usr/ports/biology/py-bx-python/Makefile Ports top last git commit: 18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a Ports top unclean checkout: yes Port dir last git commit: 2bf3834a197ccf8956332378eda8dd7577965246 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 05 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=s15amd64-setuptools2 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py312 MAKE_ARGS= FLAVOR=py312 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-bx-python/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-bx-python/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-bx-python/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-bx-python/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-bx-python/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bx-python" EXAMPLESDIR="share/examples/bx-python" DATADIR="share/bx-python" WWWDIR="www/bx-python" ETCDIR="etc/bx-python" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bx-python DOCSDIR=/usr/local/share/doc/bx-python EXAMPLESDIR=/usr/local/share/examples/bx-python WWWDIR=/usr/local/www/bx-python ETCDIR=/usr/local/etc/bx-python --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-bx-python-0.14.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-05] Installing pkg-2.7.5... [s15amd64-setuptools2-job-05] Extracting pkg-2.7.5: .......... done ===> py312-bx-python-0.14.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py312-bx-python-0.14.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user => bx_python-0.14.0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/b/bx_python/bx_python-0.14.0.tar.gz bx_python-0.14.0.tar.gz 2037 kB 49 MBps 00s ===> Fetching all distfiles required by py312-bx-python-0.14.0_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by py312-bx-python-0.14.0_2 for building => SHA256 Checksum OK for bx_python-0.14.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MIT accepted by the user ===> Fetching all distfiles required by py312-bx-python-0.14.0_2 for building ===> Extracting for py312-bx-python-0.14.0_2 => SHA256 Checksum OK for bx_python-0.14.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py312-bx-python-0.14.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-bx-python-0.14.0_2 depends on package: py312-setuptools>0 - not found ===> Installing existing package /packages/All/py312-setuptools-81.0.0.pkg [s15amd64-setuptools2-job-05] Installing py312-setuptools-81.0.0... [s15amd64-setuptools2-job-05] `-- Installing py312-more-itertools-11.1.0... [s15amd64-setuptools2-job-05] | `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-05] | | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-05] | | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-05] | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-05] | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-05] | | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-05] | | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-05] | | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing openssl-3.0.21,1... [s15amd64-setuptools2-job-05] | | `-- Extracting openssl-3.0.21,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing readline-8.3.3... [s15amd64-setuptools2-job-05] | | `-- Extracting readline-8.3.3: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting python312-3.12.13_3: .......... done [s15amd64-setuptools2-job-05] `-- Extracting py312-more-itertools-11.1.0: .......... done [s15amd64-setuptools2-job-05] `-- Installing py312-packaging-26.2... [s15amd64-setuptools2-job-05] `-- Extracting py312-packaging-26.2: .......... done [s15amd64-setuptools2-job-05] `-- Installing py312-wheel-0.47.0... [s15amd64-setuptools2-job-05] `-- Extracting py312-wheel-0.47.0: .......... done [s15amd64-setuptools2-job-05] Extracting py312-setuptools-81.0.0: .......... done ===== Message from openssl-3.0.21,1: -- This port (security/openssl) will update from 3.0 to 3.5 per 2026-07-01 (2026Q3) in anticipation of the End-of-Life of OpenSSL 3.0. A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===> py312-bx-python-0.14.0_2 depends on package: py312-setuptools>0 - found ===> Returning to build of py312-bx-python-0.14.0_2 ===> py312-bx-python-0.14.0_2 depends on package: py312-numpy>=1.16 - not found ===> Installing existing package /packages/All/py312-numpy-2.4.6_1,1.pkg [s15amd64-setuptools2-job-05] Installing py312-numpy-2.4.6_1,1... [s15amd64-setuptools2-job-05] `-- Installing gcc14-14.2.0_6... [s15amd64-setuptools2-job-05] | `-- Installing binutils-2.44,1... [s15amd64-setuptools2-job-05] | | `-- Installing zstd-1.5.7_2... [s15amd64-setuptools2-job-05] | | `-- Installing liblz4-1.10.0_2,1... [s15amd64-setuptools2-job-05] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting zstd-1.5.7_2: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting binutils-2.44,1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing gmp-6.3.0... [s15amd64-setuptools2-job-05] | `-- Extracting gmp-6.3.0: .......... done [s15amd64-setuptools2-job-05] | `-- Installing mpc-1.4.1... [s15amd64-setuptools2-job-05] | | `-- Installing mpfr-4.2.2,1... [s15amd64-setuptools2-job-05] | | `-- Extracting mpfr-4.2.2,1: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting mpc-1.4.1: .......... done [s15amd64-setuptools2-job-05] `-- Extracting gcc14-14.2.0_6: .......... done [s15amd64-setuptools2-job-05] `-- Installing openblas-0.3.33,2... [s15amd64-setuptools2-job-05] `-- Extracting openblas-0.3.33,2: .......... done [s15amd64-setuptools2-job-05] Extracting py312-numpy-2.4.6_1,1: .......... done ===== Message from gcc14-14.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py312-bx-python-0.14.0_2 depends on package: py312-numpy>=1.16 - found ===> Returning to build of py312-bx-python-0.14.0_2 ===> py312-bx-python-0.14.0_2 depends on package: py312-wheel>0 - found ===> py312-bx-python-0.14.0_2 depends on package: py312-cython>=3.2.4 - not found ===> Installing existing package /packages/All/py312-cython-3.2.4.pkg [s15amd64-setuptools2-job-05] Installing py312-cython-3.2.4... [s15amd64-setuptools2-job-05] Extracting py312-cython-3.2.4: .......... done ===> py312-bx-python-0.14.0_2 depends on package: py312-cython>=3.2.4 - found ===> Returning to build of py312-bx-python-0.14.0_2 ===> py312-bx-python-0.14.0_2 depends on file: /usr/local/bin/python3.12 - found ===> py312-bx-python-0.14.0_2 depends on package: py312-build>=0 - not found ===> Installing existing package /packages/All/py312-build-1.5.0.pkg [s15amd64-setuptools2-job-05] Installing py312-build-1.5.0... [s15amd64-setuptools2-job-05] `-- Installing py312-pyproject-hooks-1.2.0... [s15amd64-setuptools2-job-05] `-- Extracting py312-pyproject-hooks-1.2.0: .......... done [s15amd64-setuptools2-job-05] Extracting py312-build-1.5.0: .......... done ===> py312-bx-python-0.14.0_2 depends on package: py312-build>=0 - found ===> Returning to build of py312-bx-python-0.14.0_2 ===> py312-bx-python-0.14.0_2 depends on package: py312-installer>=0 - not found ===> Installing existing package /packages/All/py312-installer-1.0.1.pkg [s15amd64-setuptools2-job-05] Installing py312-installer-1.0.1... [s15amd64-setuptools2-job-05] Extracting py312-installer-1.0.1: .......... done ===> py312-bx-python-0.14.0_2 depends on package: py312-installer>=0 - found ===> Returning to build of py312-bx-python-0.14.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py312-bx-python-0.14.0_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py312-bx-python-0.14.0_2 * Getting build dependencies for wheel... /usr/local/lib/python3.12/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running egg_info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' * Building wheel... /usr/local/lib/python3.12/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) running bdist_wheel running build running build_py creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras copying lib/bx_extras/fpconst.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras copying lib/bx_extras/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras copying lib/bx_extras/stats.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras copying lib/bx_extras/lrucache.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras copying lib/bx_extras/pstat.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras copying lib/bx_extras/fpconst_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/binned_array.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/bitset_utils.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/binned_array_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/gene_reader.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/bitset_builders.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/filter.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/interval_index_file.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/interval_index_file_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/seqmapping.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/seqmapping_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/wiggle.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/wiggle_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx copying lib/bx/bitset_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi copying lib/bx/bbi/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif copying lib/bx/motif/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif copying lib/bx/motif/pwm_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif copying lib/bx/motif/pwm.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/seq_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/fasta_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/qdna_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/twobit_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/nib_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/twobit.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/fasta.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/core.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/nib.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/qdna.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq copying lib/bx/seq/seq.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/tabular copying lib/bx/tabular/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/tabular copying lib/bx/tabular/io.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/tabular creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals copying lib/bx/intervals/cluster_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals copying lib/bx/intervals/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals copying lib/bx/intervals/io.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals copying lib/bx/intervals/intersection_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals copying lib/bx/intervals/random_intervals.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intseq copying lib/bx/intseq/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intseq creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/axt.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/epo.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/lav.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/maf.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/maf_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/lav_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/score.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/score_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/core.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align copying lib/bx/align/epo_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook copying lib/bx/cookbook/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook copying lib/bx/cookbook/attribute.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/binary_file.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/seekbzip2.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/readlengths.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/cdb.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/cdb_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/filecache.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/seeklzop.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/seeklzop_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/bgzf_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc copying lib/bx/misc/filecache_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays copying lib/bx/arrays/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo copying lib/bx/phylo/phast.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo copying lib/bx/phylo/newick_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo copying lib/bx/phylo/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo copying lib/bx/phylo/phast_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo copying lib/bx/phylo/newick.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/pwm_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/logo creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io copying lib/bx/motif/io/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io copying lib/bx/motif/io/transfac.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools copying lib/bx/align/tools/chop.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools copying lib/bx/align/tools/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools copying lib/bx/align/tools/fuse.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools copying lib/bx/align/tools/tile.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools copying lib/bx/align/tools/thread.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools running egg_info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' copying lib/bx/motif/logo/template.ps -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/logo running build_ext Compiling lib/bx/bitset.pyx because it changed. [1/1] Cythonizing lib/bx/bitset.pyx building 'bx.bitset' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/kent cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/kent -Isrc -I/usr/local/include/python3.12 -c lib/bx/bitset.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bitset.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/kent -Isrc -I/usr/local/include/python3.12 -c src/binBits.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/binBits.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/kent -Isrc -I/usr/local/include/python3.12 -c src/kent/bits.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/kent/bits.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/kent -Isrc -I/usr/local/include/python3.12 -c src/kent/common.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/kent/common.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bitset.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/binBits.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/kent/bits.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/kent/common.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bitset.cpython-312.so Compiling lib/bx/intervals/intersection.pyx because it changed. [1/1] Cythonizing lib/bx/intervals/intersection.pyx building 'bx.intervals.intersection' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intervals cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/intervals/intersection.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intervals/intersection.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intervals/intersection.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/intersection.cpython-312.so Compiling lib/bx/align/_core.pyx because it changed. [1/1] Cythonizing lib/bx/align/_core.pyx building 'bx.align._core' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/align/_core.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/_core.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/_core.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/_core.cpython-312.so Compiling lib/bx/seq/_nib.pyx because it changed. [1/1] Cythonizing lib/bx/seq/_nib.pyx building 'bx.seq._nib' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/seq cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/seq/_nib.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/seq/_nib.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/seq/_nib.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/_nib.cpython-312.so Compiling lib/bx/seq/_twobit.pyx because it changed. [1/1] Cythonizing lib/bx/seq/_twobit.pyx building 'bx.seq._twobit' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/seq/_twobit.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/seq/_twobit.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/seq/_twobit.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/_twobit.cpython-312.so Compiling lib/bx/_seqmapping.pyx because it changed. [1/1] Cythonizing lib/bx/_seqmapping.pyx building 'bx._seqmapping' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/_seqmapping.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/_seqmapping.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/_seqmapping.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/_seqmapping.cpython-312.so Compiling lib/bx/misc/bgzf.pyx because it changed. [1/1] Cythonizing lib/bx/misc/bgzf.pyx building 'bx.misc.bgzf' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/misc creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/samtools cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/samtools -I/usr/local/include/python3.12 -c lib/bx/misc/bgzf.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/misc/bgzf.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/samtools -I/usr/local/include/python3.12 -c src/samtools/bgzf.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/samtools/bgzf.o src/samtools/bgzf.c:247:17: warning: implicit conversion from 'const int' to 'bgzf_byte_t' (aka 'signed char') changes value from 139 to -117 [-Wconstant-conversion] 247 | buffer[1] = GZIP_ID2; | ~ ^~~~~~~~ src/samtools/bgzf.c:255:17: warning: implicit conversion from 'const int' to 'bgzf_byte_t' (aka 'signed char') changes value from 255 to -1 [-Wconstant-conversion] 255 | buffer[9] = OS_UNKNOWN; | ~ ^~~~~~~~~~ 2 warnings generated. cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/misc/bgzf.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/samtools/bgzf.o -L/usr/local/lib -lz -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/bgzf.cpython-312.so Compiling lib/bx/intervals/cluster.pyx because it changed. [1/1] Cythonizing lib/bx/intervals/cluster.pyx building 'bx.intervals.cluster' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.12 -c lib/bx/intervals/cluster.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intervals/cluster.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.12 -c src/cluster.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/cluster.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intervals/cluster.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/cluster.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/cluster.cpython-312.so Compiling lib/bx/pwm/_position_weight_matrix.pyx because it changed. [1/1] Cythonizing lib/bx/pwm/_position_weight_matrix.pyx building 'bx.pwm._position_weight_matrix' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/pwm cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.12 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/pwm/_position_weight_matrix.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.12 -c src/pwm_utils.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/pwm_utils.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/pwm/_position_weight_matrix.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/pwm_utils.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/_position_weight_matrix.cpython-312.so Compiling lib/bx/motif/_pwm.pyx because it changed. [1/1] Cythonizing lib/bx/motif/_pwm.pyx building 'bx.motif._pwm' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/motif cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c lib/bx/motif/_pwm.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/motif/_pwm.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/motif/_pwm.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/_pwm.cpython-312.so Compiling lib/bx/arrays/array_tree.pyx because it changed. [1/1] Cythonizing lib/bx/arrays/array_tree.pyx building 'bx.arrays.array_tree' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c lib/bx/arrays/array_tree.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays/array_tree.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays/array_tree.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/array_tree.cpython-312.so Compiling lib/bx/bbi/bpt_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bpt_file.pyx building 'bx.bbi.bpt_file' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/bbi/bpt_file.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bpt_file.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bpt_file.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bpt_file.cpython-312.so Compiling lib/bx/bbi/cirtree_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/cirtree_file.pyx building 'bx.bbi.cirtree_file' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/bbi/cirtree_file.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/cirtree_file.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/cirtree_file.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/cirtree_file.cpython-312.so Compiling lib/bx/bbi/bbi_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bbi_file.pyx building 'bx.bbi.bbi_file' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c lib/bx/bbi/bbi_file.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bbi_file.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bbi_file.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bbi_file.cpython-312.so Compiling lib/bx/bbi/bigwig_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bigwig_file.pyx building 'bx.bbi.bigwig_file' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c lib/bx/bbi/bigwig_file.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bigwig_file.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bigwig_file.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bigwig_file.cpython-312.so Compiling lib/bx/bbi/bigbed_file.pyx because it changed. [1/1] Cythonizing lib/bx/bbi/bigbed_file.pyx building 'bx.bbi.bigbed_file' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c lib/bx/bbi/bigbed_file.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bigbed_file.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/bbi/bigbed_file.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bigbed_file.cpython-312.so Compiling lib/bx/align/_epo.pyx because it changed. [1/1] Cythonizing lib/bx/align/_epo.pyx building 'bx.align._epo' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c lib/bx/align/_epo.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/_epo.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/_epo.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/_epo.cpython-312.so Compiling lib/bx/arrays/bed.pyx because it changed. [1/1] Cythonizing lib/bx/arrays/bed.pyx building 'bx.arrays.bed' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/arrays/bed.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays/bed.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays/bed.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/bed.cpython-312.so warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code Compiling lib/bx/arrays/wiggle.pyx because it changed. [1/1] Cythonizing lib/bx/arrays/wiggle.pyx building 'bx.arrays.wiggle' extension cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/arrays/wiggle.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays/wiggle.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/arrays/wiggle.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/wiggle.cpython-312.so Compiling lib/bx/align/sitemask/_cpg.pyx because it changed. [1/1] Cythonizing lib/bx/align/sitemask/_cpg.pyx building 'bx.align.sitemask._cpg' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/sitemask cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/align/sitemask/_cpg.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/sitemask/_cpg.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.12 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/sitemask/find_cpg.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/sitemask/_cpg.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/align/sitemask/find_cpg.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/_cpg.cpython-312.so Compiling lib/bx/intseq/ngramcount.pyx because it changed. [1/1] Cythonizing lib/bx/intseq/ngramcount.pyx building 'bx.intseq.ngramcount' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intseq cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.12 -c lib/bx/intseq/ngramcount.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intseq/ngramcount.o cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/intseq/ngramcount.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intseq/ngramcount.cpython-312.so Compiling lib/bx/misc/_seekbzip2.pyx because it changed. [1/1] Cythonizing lib/bx/misc/_seekbzip2.pyx building 'bx.misc._seekbzip2' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/bunzip cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/bunzip -I/usr/local/include/python3.12 -c lib/bx/misc/_seekbzip2.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/misc/_seekbzip2.o cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -Isrc/bunzip -I/usr/local/include/python3.12 -c src/bunzip/micro-bunzip.c -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c:629:12: warning: assigning to 'unsigned char *' from 'char *' converts between pointers to integer types where one is of the unique plain 'char' type and the other is not [-Wpointer-sign] 629 | bd->inbuf=inbuf; | ^~~~~~ 1 warning generated. cc -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.1-STABLE-amd64-cpython-312/lib/bx/misc/_seekbzip2.o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/src/bunzip/micro-bunzip.o -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/_seekbzip2.cpython-312.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.12 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.12 copying and adjusting scripts/table_add_column.py -> build/scripts-3.12 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.12 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.12 copying and adjusting scripts/bnMapper.py -> build/scripts-3.12 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.12 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.12 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.12 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.12 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.12 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.12 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.12 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.12 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.12 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.12 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.12 copying and adjusting scripts/maf_count.py -> build/scripts-3.12 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.12 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.12 copying and adjusting scripts/interval_join.py -> build/scripts-3.12 copying and adjusting scripts/mask_quality.py -> build/scripts-3.12 copying and adjusting scripts/maf_select.py -> build/scripts-3.12 copying and adjusting scripts/nib_length.py -> build/scripts-3.12 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.12 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.12 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.12 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.12 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.12 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.12 copying and adjusting scripts/maf_chop.py -> build/scripts-3.12 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.12 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.12 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.12 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.12 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.12 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.12 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.12 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.12 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.12 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.12 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.12 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.12 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.12 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.12 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.12 copying and adjusting scripts/pretty_table.py -> build/scripts-3.12 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.12 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.12 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.12 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.12 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.12 copying and adjusting scripts/line_select.py -> build/scripts-3.12 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.12 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.12 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.12 copying and adjusting scripts/table_filter.py -> build/scripts-3.12 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.12 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.12 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.12 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.12 copying and adjusting scripts/bed_complement.py -> build/scripts-3.12 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.12 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.12 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.12 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.12 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.12 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.12 copying and adjusting scripts/align_print_template.py -> build/scripts-3.12 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.12 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.12 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.12 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.12 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.12 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.12 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.12 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.12 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.12 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.12 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.12 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.12 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.12 copying and adjusting scripts/maf_tile.py -> build/scripts-3.12 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.12 copying and adjusting scripts/maf_filter.py -> build/scripts-3.12 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.12 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.12 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.12 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.12 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.12 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.12 copying and adjusting scripts/random_lines.py -> build/scripts-3.12 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.12 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.12 changing mode of build/scripts-3.12/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.12/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.12/table_add_column.py from 644 to 755 changing mode of build/scripts-3.12/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.12/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.12/bnMapper.py from 644 to 755 changing mode of build/scripts-3.12/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.12/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.12/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.12/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.12/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.12/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.12/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.12/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.12/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.12/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.12/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.12/maf_count.py from 644 to 755 changing mode of build/scripts-3.12/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.12/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-3.12/interval_join.py from 644 to 755 changing mode of build/scripts-3.12/mask_quality.py from 644 to 755 changing mode of build/scripts-3.12/maf_select.py from 644 to 755 changing mode of build/scripts-3.12/nib_length.py from 644 to 755 changing mode of build/scripts-3.12/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.12/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.12/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.12/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.12/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.12/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.12/maf_chop.py from 644 to 755 changing mode of build/scripts-3.12/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.12/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.12/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.12/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.12/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.12/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.12/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.12/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.12/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.12/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.12/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.12/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.12/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.12/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.12/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.12/pretty_table.py from 644 to 755 changing mode of build/scripts-3.12/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.12/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.12/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.12/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.12/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.12/line_select.py from 644 to 755 changing mode of build/scripts-3.12/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.12/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.12/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.12/table_filter.py from 644 to 755 changing mode of build/scripts-3.12/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.12/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.12/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.12/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.12/bed_complement.py from 644 to 755 changing mode of build/scripts-3.12/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.12/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.12/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.12/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.12/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.12/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.12/align_print_template.py from 644 to 755 changing mode of build/scripts-3.12/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.12/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.12/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.12/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.12/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.12/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.12/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.12/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.12/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.12/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.12/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.12/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.12/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.12/maf_tile.py from 644 to 755 changing mode of build/scripts-3.12/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.12/maf_filter.py from 644 to 755 changing mode of build/scripts-3.12/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.12/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.12/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.12/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.12/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.12/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.12/random_lines.py from 644 to 755 changing mode of build/scripts-3.12/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.12/lzop_build_offset_table.py from 644 to 755 installing to build/bdist.freebsd-15.1-STABLE-amd64/wheel running install running install_lib creating build/bdist.freebsd-15.1-STABLE-amd64/wheel creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_extras copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras/fpconst.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_extras copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_extras copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras/stats.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_extras copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras/lrucache.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_extras copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras/pstat.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_extras copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx_extras/fpconst_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_extras creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bpt_file.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/cirtree_file.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bbi_file.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bigbed_file.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bigwig_file.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bbi/bigwig_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/bbi copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/binned_array.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bitset_utils.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bitset.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/motif copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/motif/logo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/logo/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif/logo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/logo/template.ps -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif/logo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/pwm_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/motif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io/transfac.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/io/transfac_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/pwm.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/motif/_pwm.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/motif creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/seq_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/fasta_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/qdna_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/_nib.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/twobit_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/nib_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/twobit.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/_twobit.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/fasta.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/core.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/nib.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/qdna.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seq/seq.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/seq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/binned_array_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/tabular copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/tabular/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/tabular copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/tabular/io.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/tabular copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/gene_reader.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bitset_builders.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/filter.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/interval_index_file.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/intervals creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/complement.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/quicksect.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/intersect.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/merge.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/coverage.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/join.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/subtract.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/base_coverage.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/find_clusters.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/operations/concat.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals/operations copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/cluster_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/io.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/intersection.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/intersection_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/random_intervals.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intervals/cluster.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intervals copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/_seqmapping.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/interval_index_file_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/intseq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intseq/ngramcount.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intseq copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/intseq/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/intseq creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/axt.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/quality.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/sitemask_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/_cpg.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/core.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/sitemask/cpg.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/sitemask copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/epo.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/lav.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/_core.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/maf.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/maf_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/lav_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/align/tools copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools/chop.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/tools copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/tools copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools/fuse.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/tools copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools/tile.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/tools copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/tools/thread.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align/tools copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/score.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/score_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/_epo.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/core.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/align/epo_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/align creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/cookbook copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/cookbook copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook/doc_optparse.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/cookbook copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/cookbook/attribute.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/cookbook creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/_seekbzip2.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/binary_file.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/seekbzip2.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/readlengths.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/cdb.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/cdb_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/filecache.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/bgzf.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/seeklzop.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/seekbzip2_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/seeklzop_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/bgzf_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/misc/filecache_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/misc creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/arrays copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/wiggle.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/arrays copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/array_tree.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/arrays copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/bed.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/arrays copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/arrays copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/arrays/array_tree_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/arrays copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seqmapping.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/phylo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo/phast.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/phylo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo/newick_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/phylo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/phylo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo/phast_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/phylo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/phylo/newick.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/phylo copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/seqmapping_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/wiggle.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/bed_score_aligned_string.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/pwm_score_maf.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/position_weight_matrix.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/pwm_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/maf_select_motifs.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/bed_score_aligned_pwm.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/pwm_score_motifs.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/pwm_score_positions.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/pwm/_position_weight_matrix.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx/pwm copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/wiggle_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/bx/bitset_tests.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx running install_egg_info Copying lib/bx_python.egg-info to build/bdist.freebsd-15.1-STABLE-amd64/wheel/./bx_python-0.14.0-py3.12.egg-info running install_scripts creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/wiggle_to_binned_array.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_col_counts.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/table_add_column.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_rand_intersect.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/nib_intervals_to_fasta.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bnMapper.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_merge_overlapping.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/wiggle_to_array_tree.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_bigwig_profile.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/wiggle_to_simple.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_chunk.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_col_counts_all.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/aggregate_scores_in_intervals.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/wiggle_to_chr_binned_array.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_truncate.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/axt_to_fasta.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_extract_chrom_ranges.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_count.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_region_coverage_by_src.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/gene_fourfold_sites.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/interval_join.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/mask_quality.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_select.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/nib_length.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_count_by_interval.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_gap_frequency.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_tile_2bit.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_tile_2.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_mask_cpg.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/div_snp_table_chr.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_chop.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/lav_to_maf.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_coverage.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_diff_basewise_summary.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_mapping_word_frequency.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_build_index.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/tfloc_summary.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_intersect.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/get_scores_in_intervals.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_build_windows.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_print_chroms.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_div_sites.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/lav_to_axt.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_to_concat_fasta.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/prefix_lines.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_mean_length_ungapped_piece.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/pretty_table.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_extend_to.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_subtract_basewise.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_to_axt.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_word_frequency.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_covered_regions.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/line_select.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_to_fasta.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_species_in_all_files.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_thread_for_species.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/table_filter.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_count_overlapping.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/interval_count_intersections.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_percent_identity.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/int_seqs_to_char_strings.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_complement.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_gc_content.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_interval_alignibility.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_print_scores.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_to_int_seqs.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/nib_chrom_intervals_to_fasta.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_split_by_src.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/align_print_template.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_shuffle_columns.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/mMK_bitset.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_translate_chars.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_percent_columns_matching.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_filter_max_wc.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_coverage_by_interval.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/bed_intersect_basewise.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/one_field_per_line.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_drop_overlapping.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/find_in_sorted_file.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/qv_to_bqv.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/axt_to_maf.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/axt_extract_ranges.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_tile.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_covered_ranges.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_filter.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/axt_to_lav.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_extract_ranges.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_extract_ranges_indexed.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_randomize.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/ucsc_gene_table_to_intervals.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/out_to_chain.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/random_lines.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/maf_limit_to_species.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts copying build/scripts-3.12/lzop_build_offset_table.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/wiggle_to_binned_array.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_col_counts.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/table_add_column.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_rand_intersect.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/nib_intervals_to_fasta.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bnMapper.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_merge_overlapping.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/wiggle_to_array_tree.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_bigwig_profile.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/wiggle_to_simple.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_chunk.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_col_counts_all.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/aggregate_scores_in_intervals.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/wiggle_to_chr_binned_array.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_truncate.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/axt_to_fasta.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_extract_chrom_ranges.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_count.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_region_coverage_by_src.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/gene_fourfold_sites.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/interval_join.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/mask_quality.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_select.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/nib_length.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_count_by_interval.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_gap_frequency.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_tile_2bit.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_tile_2.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_mask_cpg.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/div_snp_table_chr.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_chop.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/lav_to_maf.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_coverage.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_diff_basewise_summary.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_mapping_word_frequency.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_build_index.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/tfloc_summary.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_intersect.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/get_scores_in_intervals.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_build_windows.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_print_chroms.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_div_sites.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/lav_to_axt.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_to_concat_fasta.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/prefix_lines.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_mean_length_ungapped_piece.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/pretty_table.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_extend_to.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_subtract_basewise.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_to_axt.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_word_frequency.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_covered_regions.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/line_select.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_to_fasta.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_species_in_all_files.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_thread_for_species.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/table_filter.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_count_overlapping.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/interval_count_intersections.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_percent_identity.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/int_seqs_to_char_strings.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_complement.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_gc_content.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_interval_alignibility.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_print_scores.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_to_int_seqs.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/nib_chrom_intervals_to_fasta.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_split_by_src.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/align_print_template.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_shuffle_columns.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/mMK_bitset.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_translate_chars.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_percent_columns_matching.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_filter_max_wc.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_coverage_by_interval.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/bed_intersect_basewise.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/one_field_per_line.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_drop_overlapping.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/find_in_sorted_file.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/qv_to_bqv.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/axt_to_maf.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/axt_extract_ranges.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_tile.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_covered_ranges.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_filter.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/axt_to_lav.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_extract_ranges.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_extract_ranges_indexed.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_randomize.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/ucsc_gene_table_to_intervals.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/out_to_chain.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/random_lines.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/maf_limit_to_species.py to 755 changing mode of build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.data/scripts/lzop_build_offset_table.py to 755 creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/bx_python-0.14.0.dist-info/WHEEL creating '/wrkdirs/usr/ports/biology/py-bx-python/work-py312/bx_python-0.14.0/dist/.tmp-036a0yao/bx_python-0.14.0-cp312-cp312-freebsd_15_1_stable_amd64.whl' and adding 'build/bdist.freebsd-15.1-STABLE-amd64/wheel' to it adding 'bx/__init__.py' adding 'bx/_seqmapping.cpython-312.so' adding 'bx/binned_array.py' adding 'bx/binned_array_tests.py' adding 'bx/bitset.cpython-312.so' adding 'bx/bitset_builders.py' adding 'bx/bitset_tests.py' adding 'bx/bitset_utils.py' adding 'bx/filter.py' adding 'bx/gene_reader.py' adding 'bx/interval_index_file.py' adding 'bx/interval_index_file_tests.py' adding 'bx/seqmapping.py' adding 'bx/seqmapping_tests.py' adding 'bx/wiggle.py' adding 'bx/wiggle_tests.py' adding 'bx/align/__init__.py' adding 'bx/align/_core.cpython-312.so' adding 'bx/align/_epo.cpython-312.so' adding 'bx/align/axt.py' adding 'bx/align/core.py' adding 'bx/align/epo.py' adding 'bx/align/epo_tests.py' adding 'bx/align/lav.py' adding 'bx/align/lav_tests.py' adding 'bx/align/maf.py' adding 'bx/align/maf_tests.py' adding 'bx/align/score.py' adding 'bx/align/score_tests.py' adding 'bx/align/sitemask/__init__.py' adding 'bx/align/sitemask/_cpg.cpython-312.so' adding 'bx/align/sitemask/core.py' adding 'bx/align/sitemask/cpg.py' adding 'bx/align/sitemask/quality.py' adding 'bx/align/sitemask/sitemask_tests.py' adding 'bx/align/tools/__init__.py' adding 'bx/align/tools/chop.py' adding 'bx/align/tools/fuse.py' adding 'bx/align/tools/thread.py' adding 'bx/align/tools/tile.py' adding 'bx/arrays/__init__.py' adding 'bx/arrays/array_tree.cpython-312.so' adding 'bx/arrays/array_tree_tests.py' adding 'bx/arrays/bed.cpython-312.so' adding 'bx/arrays/wiggle.cpython-312.so' adding 'bx/bbi/__init__.py' adding 'bx/bbi/bbi_file.cpython-312.so' adding 'bx/bbi/bigbed_file.cpython-312.so' adding 'bx/bbi/bigwig_file.cpython-312.so' adding 'bx/bbi/bigwig_tests.py' adding 'bx/bbi/bpt_file.cpython-312.so' adding 'bx/bbi/cirtree_file.cpython-312.so' adding 'bx/cookbook/__init__.py' adding 'bx/cookbook/attribute.py' adding 'bx/cookbook/doc_optparse.py' adding 'bx/intervals/__init__.py' adding 'bx/intervals/cluster.cpython-312.so' adding 'bx/intervals/cluster_tests.py' adding 'bx/intervals/intersection.cpython-312.so' adding 'bx/intervals/intersection_tests.py' adding 'bx/intervals/io.py' adding 'bx/intervals/random_intervals.py' adding 'bx/intervals/operations/__init__.py' adding 'bx/intervals/operations/base_coverage.py' adding 'bx/intervals/operations/complement.py' adding 'bx/intervals/operations/concat.py' adding 'bx/intervals/operations/coverage.py' adding 'bx/intervals/operations/find_clusters.py' adding 'bx/intervals/operations/intersect.py' adding 'bx/intervals/operations/join.py' adding 'bx/intervals/operations/merge.py' adding 'bx/intervals/operations/quicksect.py' adding 'bx/intervals/operations/subtract.py' adding 'bx/intseq/__init__.py' adding 'bx/intseq/ngramcount.cpython-312.so' adding 'bx/misc/__init__.py' adding 'bx/misc/_seekbzip2.cpython-312.so' adding 'bx/misc/bgzf.cpython-312.so' adding 'bx/misc/bgzf_tests.py' adding 'bx/misc/binary_file.py' adding 'bx/misc/cdb.py' adding 'bx/misc/cdb_tests.py' adding 'bx/misc/filecache.py' adding 'bx/misc/filecache_tests.py' adding 'bx/misc/readlengths.py' adding 'bx/misc/seekbzip2.py' adding 'bx/misc/seekbzip2_tests.py' adding 'bx/misc/seeklzop.py' adding 'bx/misc/seeklzop_tests.py' adding 'bx/motif/__init__.py' adding 'bx/motif/_pwm.cpython-312.so' adding 'bx/motif/pwm.py' adding 'bx/motif/pwm_tests.py' adding 'bx/motif/io/__init__.py' adding 'bx/motif/io/transfac.py' adding 'bx/motif/io/transfac_tests.py' adding 'bx/motif/logo/__init__.py' adding 'bx/motif/logo/template.ps' adding 'bx/phylo/__init__.py' adding 'bx/phylo/newick.py' adding 'bx/phylo/newick_tests.py' adding 'bx/phylo/phast.py' adding 'bx/phylo/phast_tests.py' adding 'bx/pwm/__init__.py' adding 'bx/pwm/_position_weight_matrix.cpython-312.so' adding 'bx/pwm/bed_score_aligned_pwm.py' adding 'bx/pwm/bed_score_aligned_string.py' adding 'bx/pwm/maf_select_motifs.py' adding 'bx/pwm/position_weight_matrix.py' adding 'bx/pwm/pwm_score_maf.py' adding 'bx/pwm/pwm_score_motifs.py' adding 'bx/pwm/pwm_score_positions.py' adding 'bx/pwm/pwm_tests.py' adding 'bx/seq/__init__.py' adding 'bx/seq/_nib.cpython-312.so' adding 'bx/seq/_twobit.cpython-312.so' adding 'bx/seq/core.py' adding 'bx/seq/fasta.py' adding 'bx/seq/fasta_tests.py' adding 'bx/seq/nib.py' adding 'bx/seq/nib_tests.py' adding 'bx/seq/qdna.py' adding 'bx/seq/qdna_tests.py' adding 'bx/seq/seq.py' adding 'bx/seq/seq_tests.py' adding 'bx/seq/twobit.py' adding 'bx/seq/twobit_tests.py' adding 'bx/tabular/__init__.py' adding 'bx/tabular/io.py' adding 'bx_extras/__init__.py' adding 'bx_extras/fpconst.py' adding 'bx_extras/fpconst_tests.py' adding 'bx_extras/lrucache.py' adding 'bx_extras/pstat.py' adding 'bx_extras/stats.py' adding 'bx_python-0.14.0.data/scripts/aggregate_scores_in_intervals.py' adding 'bx_python-0.14.0.data/scripts/align_print_template.py' adding 'bx_python-0.14.0.data/scripts/axt_extract_ranges.py' adding 'bx_python-0.14.0.data/scripts/axt_to_fasta.py' adding 'bx_python-0.14.0.data/scripts/axt_to_lav.py' adding 'bx_python-0.14.0.data/scripts/axt_to_maf.py' adding 'bx_python-0.14.0.data/scripts/bed_bigwig_profile.py' adding 'bx_python-0.14.0.data/scripts/bed_build_windows.py' adding 'bx_python-0.14.0.data/scripts/bed_complement.py' adding 'bx_python-0.14.0.data/scripts/bed_count_by_interval.py' adding 'bx_python-0.14.0.data/scripts/bed_count_overlapping.py' adding 'bx_python-0.14.0.data/scripts/bed_coverage.py' adding 'bx_python-0.14.0.data/scripts/bed_coverage_by_interval.py' adding 'bx_python-0.14.0.data/scripts/bed_diff_basewise_summary.py' adding 'bx_python-0.14.0.data/scripts/bed_extend_to.py' adding 'bx_python-0.14.0.data/scripts/bed_intersect.py' adding 'bx_python-0.14.0.data/scripts/bed_intersect_basewise.py' adding 'bx_python-0.14.0.data/scripts/bed_merge_overlapping.py' adding 'bx_python-0.14.0.data/scripts/bed_rand_intersect.py' adding 'bx_python-0.14.0.data/scripts/bed_subtract_basewise.py' adding 'bx_python-0.14.0.data/scripts/bnMapper.py' adding 'bx_python-0.14.0.data/scripts/div_snp_table_chr.py' adding 'bx_python-0.14.0.data/scripts/find_in_sorted_file.py' adding 'bx_python-0.14.0.data/scripts/gene_fourfold_sites.py' adding 'bx_python-0.14.0.data/scripts/get_scores_in_intervals.py' adding 'bx_python-0.14.0.data/scripts/int_seqs_to_char_strings.py' adding 'bx_python-0.14.0.data/scripts/interval_count_intersections.py' adding 'bx_python-0.14.0.data/scripts/interval_join.py' adding 'bx_python-0.14.0.data/scripts/lav_to_axt.py' adding 'bx_python-0.14.0.data/scripts/lav_to_maf.py' adding 'bx_python-0.14.0.data/scripts/line_select.py' adding 'bx_python-0.14.0.data/scripts/lzop_build_offset_table.py' adding 'bx_python-0.14.0.data/scripts/mMK_bitset.py' adding 'bx_python-0.14.0.data/scripts/maf_build_index.py' adding 'bx_python-0.14.0.data/scripts/maf_chop.py' adding 'bx_python-0.14.0.data/scripts/maf_chunk.py' adding 'bx_python-0.14.0.data/scripts/maf_col_counts.py' adding 'bx_python-0.14.0.data/scripts/maf_col_counts_all.py' adding 'bx_python-0.14.0.data/scripts/maf_count.py' adding 'bx_python-0.14.0.data/scripts/maf_covered_ranges.py' adding 'bx_python-0.14.0.data/scripts/maf_covered_regions.py' adding 'bx_python-0.14.0.data/scripts/maf_div_sites.py' adding 'bx_python-0.14.0.data/scripts/maf_drop_overlapping.py' adding 'bx_python-0.14.0.data/scripts/maf_extract_chrom_ranges.py' adding 'bx_python-0.14.0.data/scripts/maf_extract_ranges.py' adding 'bx_python-0.14.0.data/scripts/maf_extract_ranges_indexed.py' adding 'bx_python-0.14.0.data/scripts/maf_filter.py' adding 'bx_python-0.14.0.data/scripts/maf_filter_max_wc.py' adding 'bx_python-0.14.0.data/scripts/maf_gap_frequency.py' adding 'bx_python-0.14.0.data/scripts/maf_gc_content.py' adding 'bx_python-0.14.0.data/scripts/maf_interval_alignibility.py' adding 'bx_python-0.14.0.data/scripts/maf_limit_to_species.py' adding 'bx_python-0.14.0.data/scripts/maf_mapping_word_frequency.py' adding 'bx_python-0.14.0.data/scripts/maf_mask_cpg.py' adding 'bx_python-0.14.0.data/scripts/maf_mean_length_ungapped_piece.py' adding 'bx_python-0.14.0.data/scripts/maf_percent_columns_matching.py' adding 'bx_python-0.14.0.data/scripts/maf_percent_identity.py' adding 'bx_python-0.14.0.data/scripts/maf_print_chroms.py' adding 'bx_python-0.14.0.data/scripts/maf_print_scores.py' adding 'bx_python-0.14.0.data/scripts/maf_randomize.py' adding 'bx_python-0.14.0.data/scripts/maf_region_coverage_by_src.py' adding 'bx_python-0.14.0.data/scripts/maf_select.py' adding 'bx_python-0.14.0.data/scripts/maf_shuffle_columns.py' adding 'bx_python-0.14.0.data/scripts/maf_species_in_all_files.py' adding 'bx_python-0.14.0.data/scripts/maf_split_by_src.py' adding 'bx_python-0.14.0.data/scripts/maf_thread_for_species.py' adding 'bx_python-0.14.0.data/scripts/maf_tile.py' adding 'bx_python-0.14.0.data/scripts/maf_tile_2.py' adding 'bx_python-0.14.0.data/scripts/maf_tile_2bit.py' adding 'bx_python-0.14.0.data/scripts/maf_to_axt.py' adding 'bx_python-0.14.0.data/scripts/maf_to_concat_fasta.py' adding 'bx_python-0.14.0.data/scripts/maf_to_fasta.py' adding 'bx_python-0.14.0.data/scripts/maf_to_int_seqs.py' adding 'bx_python-0.14.0.data/scripts/maf_translate_chars.py' adding 'bx_python-0.14.0.data/scripts/maf_truncate.py' adding 'bx_python-0.14.0.data/scripts/maf_word_frequency.py' adding 'bx_python-0.14.0.data/scripts/mask_quality.py' adding 'bx_python-0.14.0.data/scripts/nib_chrom_intervals_to_fasta.py' adding 'bx_python-0.14.0.data/scripts/nib_intervals_to_fasta.py' adding 'bx_python-0.14.0.data/scripts/nib_length.py' adding 'bx_python-0.14.0.data/scripts/one_field_per_line.py' adding 'bx_python-0.14.0.data/scripts/out_to_chain.py' adding 'bx_python-0.14.0.data/scripts/prefix_lines.py' adding 'bx_python-0.14.0.data/scripts/pretty_table.py' adding 'bx_python-0.14.0.data/scripts/qv_to_bqv.py' adding 'bx_python-0.14.0.data/scripts/random_lines.py' adding 'bx_python-0.14.0.data/scripts/table_add_column.py' adding 'bx_python-0.14.0.data/scripts/table_filter.py' adding 'bx_python-0.14.0.data/scripts/tfloc_summary.py' adding 'bx_python-0.14.0.data/scripts/ucsc_gene_table_to_intervals.py' adding 'bx_python-0.14.0.data/scripts/wiggle_to_array_tree.py' adding 'bx_python-0.14.0.data/scripts/wiggle_to_binned_array.py' adding 'bx_python-0.14.0.data/scripts/wiggle_to_chr_binned_array.py' adding 'bx_python-0.14.0.data/scripts/wiggle_to_simple.py' adding 'bx_python-0.14.0.dist-info/licenses/LICENSE' adding 'bx_python-0.14.0.dist-info/METADATA' adding 'bx_python-0.14.0.dist-info/WHEEL' adding 'bx_python-0.14.0.dist-info/top_level.txt' adding 'bx_python-0.14.0.dist-info/RECORD' removing build/bdist.freebsd-15.1-STABLE-amd64/wheel Successfully built bx_python-0.14.0-cp312-cp312-freebsd_15_1_stable_amd64.whl =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-bx-python-0.14.0_2 depends on package: py312-numpy>=1.16 - found ===> py312-bx-python-0.14.0_2 depends on package: py312-pyparsing>0 - not found ===> Installing existing package /packages/All/py312-pyparsing-3.3.2.pkg [s15amd64-setuptools2-job-05] Installing py312-pyparsing-3.3.2... [s15amd64-setuptools2-job-05] Extracting py312-pyparsing-3.3.2: .......... done ===> py312-bx-python-0.14.0_2 depends on package: py312-pyparsing>0 - found ===> Returning to build of py312-bx-python-0.14.0_2 ===> py312-bx-python-0.14.0_2 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py312-bx-python-0.14.0_2 ===> Generating temporary packing list ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-07T09:38:06+0000' 'PKG_NOTE_ports_top_git_hash=18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=2bf3834a197ccf8956332378eda8dd7577965246' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py312-bx-python-0.14.0_2 ===> Building py312-bx-python-0.14.0_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py312-bx-python-0.14.0_2 build of biology/py-bx-python@py312 | py312-bx-python-0.14.0_2 ended at Tue Jul 7 18:39:43 JST 2026 build time: 00:03:15