=>> Building biology/py-ete3 build started at Wed Jul 8 12:54:12 JST 2026 port directory: /usr/ports/biology/py-ete3 package name: py312-ete3-3.1.3_5 building for: FreeBSD s15amd64-setuptools2-job-05 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 781 Jul 5 18:52 /usr/ports/biology/py-ete3/Makefile Ports top last git commit: 18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a Ports top unclean checkout: yes Port dir last git commit: f3b8e6f595d64e7dcfdfe646498d73387575a87c Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 05 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=s15amd64-setuptools2 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py312 MAKE_ARGS= FLAVOR=py312 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-ete3/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-ete3/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-ete3/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-ete3/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-ete3/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PYQT_APIDIR=share/PyQt5/3.12/qsci PYQT_DOCDIR=share/doc/PyQt5/3.12 PYQT_EXAMPLEDIR=share/examples/PyQt5/3.12 PYQT_SIPDIR=/usr/local/lib/python3.12/site-packages/PyQt5/bindings PYQT_DESIGNERDIR=/designer/PyQt5/3.12 PYQT_QMLDIR=/PyQt5/3.12 PYQT_SIPVERSION=6.15.3 PYQT_QSCIVERSION=2.14.1 PYQT_PYQTVERSION=5.15.11 OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py312-ete3" EXAMPLESDIR="share/examples/py312-ete3" DATADIR="share/py312-ete3" WWWDIR="www/py312-ete3" ETCDIR="etc/py312-ete3" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py312-ete3 DOCSDIR=/usr/local/share/doc/py312-ete3 EXAMPLESDIR=/usr/local/share/examples/py312-ete3 WWWDIR=/usr/local/www/py312-ete3 ETCDIR=/usr/local/etc/py312-ete3 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ete3-3.1.3_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-05] Installing pkg-2.7.5... [s15amd64-setuptools2-job-05] Extracting pkg-2.7.5: .......... done ===> py312-ete3-3.1.3_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py312-ete3-3.1.3_5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user => ete3-3.1.3.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/e/ete3/ete3-3.1.3.tar.gz ete3-3.1.3.tar.gz 4656 kB 48 MBps 00s ===> Fetching all distfiles required by py312-ete3-3.1.3_5 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py312-ete3-3.1.3_5 for building => SHA256 Checksum OK for ete3-3.1.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py312-ete3-3.1.3_5 for building ===> Extracting for py312-ete3-3.1.3_5 => SHA256 Checksum OK for ete3-3.1.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py312-ete3-3.1.3_5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ete3-3.1.3_5 depends on package: py312-numpy>=1.16 - not found ===> Installing existing package /packages/All/py312-numpy-2.4.6_1,1.pkg [s15amd64-setuptools2-job-05] Installing py312-numpy-2.4.6_1,1... [s15amd64-setuptools2-job-05] `-- Installing gcc14-14.2.0_6... [s15amd64-setuptools2-job-05] | `-- Installing binutils-2.44,1... [s15amd64-setuptools2-job-05] | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-05] | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-05] | | `-- Installing zstd-1.5.7_2... [s15amd64-setuptools2-job-05] | | `-- Installing liblz4-1.10.0_2,1... [s15amd64-setuptools2-job-05] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting zstd-1.5.7_2: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting binutils-2.44,1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing gmp-6.3.0... [s15amd64-setuptools2-job-05] | `-- Extracting gmp-6.3.0: .......... done [s15amd64-setuptools2-job-05] | `-- Installing mpc-1.4.1... [s15amd64-setuptools2-job-05] | | `-- Installing mpfr-4.2.2,1... [s15amd64-setuptools2-job-05] | | `-- Extracting mpfr-4.2.2,1: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting mpc-1.4.1: .......... done [s15amd64-setuptools2-job-05] `-- Extracting gcc14-14.2.0_6: .......... done [s15amd64-setuptools2-job-05] `-- Installing openblas-0.3.33,2... [s15amd64-setuptools2-job-05] `-- Extracting openblas-0.3.33,2: .......... done [s15amd64-setuptools2-job-05] `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-05] | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-05] | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-05] | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-05] | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-05] | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-05] | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-05] | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing openssl-3.0.21,1... [s15amd64-setuptools2-job-05] | `-- Extracting openssl-3.0.21,1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing readline-8.3.3... [s15amd64-setuptools2-job-05] | `-- Extracting readline-8.3.3: .......... done [s15amd64-setuptools2-job-05] `-- Extracting python312-3.12.13_3: .......... done [s15amd64-setuptools2-job-05] Extracting py312-numpy-2.4.6_1,1: .......... done ===== Message from gcc14-14.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from openssl-3.0.21,1: -- This port (security/openssl) will update from 3.0 to 3.5 per 2026-07-01 (2026Q3) in anticipation of the End-of-Life of OpenSSL 3.0. A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===> py312-ete3-3.1.3_5 depends on package: py312-numpy>=1.16 - found ===> Returning to build of py312-ete3-3.1.3_5 ===> py312-ete3-3.1.3_5 depends on package: py312-lxml>0 - not found ===> Installing existing package /packages/All/py312-lxml-6.1.1.pkg [s15amd64-setuptools2-job-05] Installing py312-lxml-6.1.1... [s15amd64-setuptools2-job-05] `-- Installing libxml2-2.15.3... [s15amd64-setuptools2-job-05] `-- Extracting libxml2-2.15.3: .......... done [s15amd64-setuptools2-job-05] `-- Installing libxslt-1.1.45... [s15amd64-setuptools2-job-05] | `-- Installing libgcrypt-1.12.2... [s15amd64-setuptools2-job-05] | | `-- Installing libgpg-error-1.61... [s15amd64-setuptools2-job-05] | | `-- Extracting libgpg-error-1.61: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting libgcrypt-1.12.2: .......... done [s15amd64-setuptools2-job-05] `-- Extracting libxslt-1.1.45: .......... done [s15amd64-setuptools2-job-05] Extracting py312-lxml-6.1.1: .......... done ===> py312-ete3-3.1.3_5 depends on package: py312-lxml>0 - found ===> Returning to build of py312-ete3-3.1.3_5 ===> py312-ete3-3.1.3_5 depends on package: py312-six>0 - not found ===> Installing existing package /packages/All/py312-six-1.17.0.pkg [s15amd64-setuptools2-job-05] Installing py312-six-1.17.0... [s15amd64-setuptools2-job-05] Extracting py312-six-1.17.0: .......... done ===> py312-ete3-3.1.3_5 depends on package: py312-six>0 - found ===> Returning to build of py312-ete3-3.1.3_5 ===> py312-ete3-3.1.3_5 depends on package: py312-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py312-setuptools-81.0.0.pkg [s15amd64-setuptools2-job-05] Installing py312-setuptools-81.0.0... [s15amd64-setuptools2-job-05] `-- Installing py312-more-itertools-11.1.0... [s15amd64-setuptools2-job-05] `-- Extracting py312-more-itertools-11.1.0: .......... done [s15amd64-setuptools2-job-05] `-- Installing py312-packaging-26.2... [s15amd64-setuptools2-job-05] `-- Extracting py312-packaging-26.2: .......... done [s15amd64-setuptools2-job-05] `-- Installing py312-wheel-0.47.0... [s15amd64-setuptools2-job-05] `-- Extracting py312-wheel-0.47.0: .......... done [s15amd64-setuptools2-job-05] Extracting py312-setuptools-81.0.0: .......... done ===> py312-ete3-3.1.3_5 depends on package: py312-setuptools>=63.1.0 - found ===> Returning to build of py312-ete3-3.1.3_5 ===> py312-ete3-3.1.3_5 depends on file: /usr/local/bin/python3.12 - found ===> py312-ete3-3.1.3_5 depends on package: py312-qt5-pyqt>=5.15.11 - not found ===> Installing existing package /packages/All/py312-qt5-pyqt-5.15.11_2.pkg [s15amd64-setuptools2-job-05] Installing py312-qt5-pyqt-5.15.11_2... [s15amd64-setuptools2-job-05] `-- Installing dbus-1.16.2_4,1... [s15amd64-setuptools2-job-05] | `-- Installing libICE-1.1.2,1... [s15amd64-setuptools2-job-05] | `-- Extracting libICE-1.1.2,1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing libSM-1.2.6,1... [s15amd64-setuptools2-job-05] | `-- Extracting libSM-1.2.6,1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing libX11-1.8.13_1,1... [s15amd64-setuptools2-job-05] | | `-- Installing libxcb-1.17.0... [s15amd64-setuptools2-job-05] | | `-- Installing libXau-1.0.12... [s15amd64-setuptools2-job-05] | | `-- Extracting libXau-1.0.12: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libXdmcp-1.1.5... [s15amd64-setuptools2-job-05] | | | `-- Installing xorgproto-2025.1... [s15amd64-setuptools2-job-05] | | | `-- Extracting xorgproto-2025.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libXdmcp-1.1.5: ......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libxcb-1.17.0: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting libX11-1.8.13_1,1: .......... done ===> Creating groups Creating group 'messagebus' with gid '556' ===> Creating users Creating user 'messagebus' with uid '556' [s15amd64-setuptools2-job-05] `-- Extracting dbus-1.16.2_4,1: ......... done [s15amd64-setuptools2-job-05] `-- Installing libglvnd-1.7.0... [s15amd64-setuptools2-job-05] | `-- Installing libXext-1.3.7,1... [s15amd64-setuptools2-job-05] | `-- Extracting libXext-1.3.7,1: .......... done [s15amd64-setuptools2-job-05] `-- Extracting libglvnd-1.7.0: .......... done [s15amd64-setuptools2-job-05] `-- Installing py312-PyQt5-sip-12.18.0... [s15amd64-setuptools2-job-05] `-- Extracting py312-PyQt5-sip-12.18.0: ......... done [s15amd64-setuptools2-job-05] `-- Installing py312-dbus-1.4.0... [s15amd64-setuptools2-job-05] | `-- Installing glib-2.86.4,2... [s15amd64-setuptools2-job-05] | | `-- Installing libiconv-1.18_1... [s15amd64-setuptools2-job-05] | | `-- Extracting libiconv-1.18_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing pcre2-10.47_1... [s15amd64-setuptools2-job-05] | | `-- Extracting pcre2-10.47_1: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting glib-2.86.4,2: .......... done [s15amd64-setuptools2-job-05] | `-- Installing py312-pygobject-3.54.5_1... [s15amd64-setuptools2-job-05] | | `-- Installing cairo-1.18.2,3... [s15amd64-setuptools2-job-05] | | `-- Installing fontconfig-2.17.1,1... [s15amd64-setuptools2-job-05] | | | `-- Installing freetype2-2.14.3... [s15amd64-setuptools2-job-05] | | | `-- Installing brotli-1.2.0,1... [s15amd64-setuptools2-job-05] | | | `-- Extracting brotli-1.2.0,1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing png-1.6.58... [s15amd64-setuptools2-job-05] | | | `-- Extracting png-1.6.58: .......... done [s15amd64-setuptools2-job-05] | | | `-- Extracting freetype2-2.14.3: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting fontconfig-2.17.1,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libXrender-0.9.12... [s15amd64-setuptools2-job-05] | | `-- Extracting libXrender-0.9.12: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing lzo2-2.10_2... [s15amd64-setuptools2-job-05] | | `-- Extracting lzo2-2.10_2: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing pixman-0.46.4... [s15amd64-setuptools2-job-05] | | `-- Extracting pixman-0.46.4: ......... done [s15amd64-setuptools2-job-05] | | `-- Extracting cairo-1.18.2,3: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing gobject-introspection-1.86.0,1... [s15amd64-setuptools2-job-05] | | `-- Extracting gobject-introspection-1.86.0,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing py312-pycairo-1.29.0... [s15amd64-setuptools2-job-05] | | `-- Extracting py312-pycairo-1.29.0: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing pygobject-common-3.54.5_1... [s15amd64-setuptools2-job-05] | | `-- Extracting pygobject-common-3.54.5_1: ..... done [s15amd64-setuptools2-job-05] | `-- Extracting py312-pygobject-3.54.5_1: .......... done [s15amd64-setuptools2-job-05] `-- Extracting py312-dbus-1.4.0: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-connectivity-5.15.19p0... [s15amd64-setuptools2-job-05] | `-- Installing qt5-concurrent-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Installing qt5-core-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Installing double-conversion-3.4.0... [s15amd64-setuptools2-job-05] | | `-- Extracting double-conversion-3.4.0: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing icu-76.1,1... [s15amd64-setuptools2-job-05] | | `-- Extracting icu-76.1,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-core-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting qt5-concurrent-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | `-- Installing qt5-declarative-5.15.19p23... [s15amd64-setuptools2-job-05] | | `-- Installing qt5-gui-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Installing encodings-1.1.0,1... [s15amd64-setuptools2-job-05] | | `-- Extracting encodings-1.1.0,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing harfbuzz-14.2.1... [s15amd64-setuptools2-job-05] | | | `-- Installing graphite2-1.3.15... [s15amd64-setuptools2-job-05] | | | `-- Extracting graphite2-1.3.15: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting harfbuzz-14.2.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing jpeg-turbo-3.1.4.1... [s15amd64-setuptools2-job-05] | | `-- Extracting jpeg-turbo-3.1.4.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libXi-1.8.3,1... [s15amd64-setuptools2-job-05] | | | `-- Installing libXfixes-6.0.1... [s15amd64-setuptools2-job-05] | | | `-- Extracting libXfixes-6.0.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libXi-1.8.3,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libevdev-1.13.2... [s15amd64-setuptools2-job-05] | | `-- Extracting libevdev-1.13.2: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libinput-1.31.1... [s15amd64-setuptools2-job-05] | | | `-- Installing libepoll-shim-0.0.20240608... [s15amd64-setuptools2-job-05] | | | `-- Extracting libepoll-shim-0.0.20240608: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing libmtdev-1.1.7... [s15amd64-setuptools2-job-05] | | | `-- Extracting libmtdev-1.1.7: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing libudev-devd-0.6.0... [s15amd64-setuptools2-job-05] | | | `-- Extracting libudev-devd-0.6.0: ........ done [s15amd64-setuptools2-job-05] | | | `-- Installing libwacom-2.12.1... [s15amd64-setuptools2-job-05] | | | `-- Installing libgudev-237... [s15amd64-setuptools2-job-05] | | | `-- Extracting libgudev-237: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing py312-libevdev-0.11_2... [s15amd64-setuptools2-job-05] | | | `-- Extracting py312-libevdev-0.11_2: .......... done [s15amd64-setuptools2-job-05] | | | `-- Extracting libwacom-2.12.1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing lua54-5.4.8... [s15amd64-setuptools2-job-05] | | | `-- Installing libedit-3.1.20260512,1... [s15amd64-setuptools2-job-05] | | | `-- Extracting libedit-3.1.20260512,1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Extracting lua54-5.4.8: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing py312-evdev-1.9.1_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting py312-evdev-1.9.1_1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing py312-pyudev-0.24.1_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting py312-pyudev-0.24.1_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libinput-1.31.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libxkbcommon-1.13.2... [s15amd64-setuptools2-job-05] | | | `-- Installing wayland-1.24.0_2... [s15amd64-setuptools2-job-05] | | | `-- Extracting wayland-1.24.0_2: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing xkeyboard-config-2.48... [s15amd64-setuptools2-job-05] | | | `-- Extracting xkeyboard-config-2.48: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libxkbcommon-1.13.2: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing qt5-dbus-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-dbus-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing qt5-network-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-network-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing vulkan-headers-1.4.354... [s15amd64-setuptools2-job-05] | | `-- Extracting vulkan-headers-1.4.354: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing xcb-util-image-0.4.1... [s15amd64-setuptools2-job-05] | | | `-- Installing xcb-util-0.4.1,1... [s15amd64-setuptools2-job-05] | | | `-- Extracting xcb-util-0.4.1,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting xcb-util-image-0.4.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing xcb-util-keysyms-0.4.1... [s15amd64-setuptools2-job-05] | | `-- Extracting xcb-util-keysyms-0.4.1: ......... done [s15amd64-setuptools2-job-05] | | `-- Installing xcb-util-renderutil-0.3.10... [s15amd64-setuptools2-job-05] | | `-- Extracting xcb-util-renderutil-0.3.10: ......... done [s15amd64-setuptools2-job-05] | | `-- Installing xcb-util-wm-0.4.2... [s15amd64-setuptools2-job-05] | | `-- Extracting xcb-util-wm-0.4.2: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing xdg-utils-1.2.1... [s15amd64-setuptools2-job-05] | | | `-- Installing hicolor-icon-theme-0.18... [s15amd64-setuptools2-job-05] | | | `-- Extracting hicolor-icon-theme-0.18: . done [s15amd64-setuptools2-job-05] | | | `-- Installing xprop-1.2.8... [s15amd64-setuptools2-job-05] | | | `-- Extracting xprop-1.2.8: ..... done [s15amd64-setuptools2-job-05] | | | `-- Installing xset-1.2.5_1... [s15amd64-setuptools2-job-05] | | | `-- Installing libXmu-1.3.1,1... [s15amd64-setuptools2-job-05] | | | | `-- Installing libXt-1.3.1,1... [s15amd64-setuptools2-job-05] | | | | `-- Extracting libXt-1.3.1,1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Extracting libXmu-1.3.1,1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Extracting xset-1.2.5_1: ..... done [s15amd64-setuptools2-job-05] | | `-- Extracting xdg-utils-1.2.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing xorg-fonts-truetype-7.7_1... [s15amd64-setuptools2-job-05] | | | `-- Installing dejavu-2.37_4... [s15amd64-setuptools2-job-05] | | | `-- Installing mkfontscale-1.2.4... [s15amd64-setuptools2-job-05] | | | | `-- Installing libfontenc-1.1.9... [s15amd64-setuptools2-job-05] | | | | `-- Extracting libfontenc-1.1.9: ......... done [s15amd64-setuptools2-job-05] | | | `-- Extracting mkfontscale-1.2.4: ....... done [s15amd64-setuptools2-job-05] | | | `-- Extracting dejavu-2.37_4: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing font-bh-ttf-1.0.4... [s15amd64-setuptools2-job-05] | | | `-- Extracting font-bh-ttf-1.0.4: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing font-misc-ethiopic-1.0.5... [s15amd64-setuptools2-job-05] | | | `-- Extracting font-misc-ethiopic-1.0.5: ...... done [s15amd64-setuptools2-job-05] | | | `-- Installing font-misc-meltho-1.0.4... [s15amd64-setuptools2-job-05] | | | `-- Extracting font-misc-meltho-1.0.4: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting xorg-fonts-truetype-7.7_1: ... done [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-gui-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing qt5-sql-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-sql-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing qt5-widgets-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-widgets-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting qt5-declarative-5.15.19p23: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-connectivity-5.15.19p0: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-designer-5.15.19p3... [s15amd64-setuptools2-job-05] | `-- Installing qt5-assistant-5.15.19p3... [s15amd64-setuptools2-job-05] | | `-- Installing qt5-help-5.15.19p3... [s15amd64-setuptools2-job-05] | | `-- Installing qt5-sqldrivers-sqlite3-5.15.19p96... [s15amd64-setuptools2-job-05] | | | `-- Installing sqlite3-3.53.3,1... [s15amd64-setuptools2-job-05] | | | `-- Extracting sqlite3-3.53.3,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-sqldrivers-sqlite3-5.15.19p96: ..... done [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-help-5.15.19p3: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing qt5-printsupport-5.15.19p96... [s15amd64-setuptools2-job-05] | | `-- Installing cups-2.4.19_1... [s15amd64-setuptools2-job-05] | | | `-- Installing avahi-app-0.8_6... [s15amd64-setuptools2-job-05] | | | `-- Installing dbus-glib-0.114... [s15amd64-setuptools2-job-05] | | | `-- Extracting dbus-glib-0.114: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing gdbm-1.26... [s15amd64-setuptools2-job-05] | | | `-- Extracting gdbm-1.26: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing gnome_subr-1.0... [s15amd64-setuptools2-job-05] | | | `-- Extracting gnome_subr-1.0: .... done [s15amd64-setuptools2-job-05] | | | `-- Installing libdaemon-0.14_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting libdaemon-0.14_1: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing libevent-2.1.13... [s15amd64-setuptools2-job-05] | | | `-- Extracting libevent-2.1.13: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [s15amd64-setuptools2-job-05] | | | `-- Extracting avahi-app-0.8_6: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing libpaper-1.1.28_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [s15amd64-setuptools2-job-05] | | `-- Extracting cups-2.4.19_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting qt5-printsupport-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting qt5-assistant-5.15.19p3: ...... done [s15amd64-setuptools2-job-05] | `-- Installing qt5-uiplugin-5.15.19p3... [s15amd64-setuptools2-job-05] | `-- Extracting qt5-uiplugin-5.15.19p3: .......... done [s15amd64-setuptools2-job-05] | `-- Installing qt5-xml-5.15.19p96... [s15amd64-setuptools2-job-05] | `-- Extracting qt5-xml-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-designer-5.15.19p3: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-imageformats-5.15.19p2... [s15amd64-setuptools2-job-05] | `-- Installing jasper-4.2.9... [s15amd64-setuptools2-job-05] | `-- Extracting jasper-4.2.9: .......... done [s15amd64-setuptools2-job-05] | `-- Installing libmng-2.0.3_3... [s15amd64-setuptools2-job-05] | | `-- Installing lcms2-2.19.1... [s15amd64-setuptools2-job-05] | | `-- Installing tiff-4.7.1_1... [s15amd64-setuptools2-job-05] | | | `-- Installing jbigkit-2.1_3... [s15amd64-setuptools2-job-05] | | | `-- Extracting jbigkit-2.1_3: .......... done [s15amd64-setuptools2-job-05] | | | `-- Installing lerc-4.1.0... [s15amd64-setuptools2-job-05] | | | `-- Extracting lerc-4.1.0: ........ done [s15amd64-setuptools2-job-05] | | | `-- Installing libdeflate-1.25... [s15amd64-setuptools2-job-05] | | | `-- Extracting libdeflate-1.25: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting tiff-4.7.1_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting lcms2-2.19.1: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting libmng-2.0.3_3: ......... done [s15amd64-setuptools2-job-05] | `-- Installing webp-1.6.0... [s15amd64-setuptools2-job-05] | | `-- Installing giflib-5.2.2... [s15amd64-setuptools2-job-05] | | `-- Extracting giflib-5.2.2: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting webp-1.6.0: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-imageformats-5.15.19p2: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-location-5.15.19p7... [s15amd64-setuptools2-job-05] | `-- Installing qt5-serialport-5.15.19p0... [s15amd64-setuptools2-job-05] | `-- Extracting qt5-serialport-5.15.19p0: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-location-5.15.19p7: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-multimedia-5.15.19p2... [s15amd64-setuptools2-job-05] | `-- Installing alsa-lib-1.2.15.3... [s15amd64-setuptools2-job-05] | `-- Extracting alsa-lib-1.2.15.3: .......... done [s15amd64-setuptools2-job-05] | `-- Installing alsa-plugins-1.2.12_2... [s15amd64-setuptools2-job-05] | `-- Extracting alsa-plugins-1.2.12_2: .......... done [s15amd64-setuptools2-job-05] | `-- Installing gstreamer1-1.28.4... [s15amd64-setuptools2-job-05] | | `-- Installing libunwind-20250904... [s15amd64-setuptools2-job-05] | | `-- Extracting libunwind-20250904: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting gstreamer1-1.28.4: .......... done [s15amd64-setuptools2-job-05] | `-- Installing gstreamer1-plugins-1.28.4... [s15amd64-setuptools2-job-05] | | `-- Installing iso-codes-4.20.1... [s15amd64-setuptools2-job-05] | | `-- Extracting iso-codes-4.20.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libdrm-2.4.133,1... [s15amd64-setuptools2-job-05] | | `-- Installing libpciaccess-0.19... [s15amd64-setuptools2-job-05] | | | `-- Installing hwdata-0.408,1... [s15amd64-setuptools2-job-05] | | | `-- Extracting hwdata-0.408,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libpciaccess-0.19: ........ done [s15amd64-setuptools2-job-05] | | `-- Extracting libdrm-2.4.133,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing orc-0.4.42... [s15amd64-setuptools2-job-05] | | `-- Extracting orc-0.4.42: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting gstreamer1-plugins-1.28.4: .......... done [s15amd64-setuptools2-job-05] | `-- Installing gstreamer1-plugins-bad-1.28.4... [s15amd64-setuptools2-job-05] | | `-- Installing json-glib-1.10.8... [s15amd64-setuptools2-job-05] | | `-- Extracting json-glib-1.10.8: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing pango-1.57.1... [s15amd64-setuptools2-job-05] | | `-- Installing fribidi-1.0.16... [s15amd64-setuptools2-job-05] | | `-- Extracting fribidi-1.0.16: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libXft-2.3.8... [s15amd64-setuptools2-job-05] | | `-- Extracting libXft-2.3.8: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libthai-0.1.30... [s15amd64-setuptools2-job-05] | | | `-- Installing libdatrie-0.2.14_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting libdatrie-0.2.14_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libthai-0.1.30: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting pango-1.57.1: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting gstreamer1-plugins-bad-1.28.4: .......... done [s15amd64-setuptools2-job-05] | `-- Installing libXv-1.0.13,1... [s15amd64-setuptools2-job-05] | `-- Extracting libXv-1.0.13,1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing openal-soft-1.25.1... [s15amd64-setuptools2-job-05] | | `-- Installing libmysofa-1.3.4... [s15amd64-setuptools2-job-05] | | `-- Extracting libmysofa-1.3.4: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting openal-soft-1.25.1: .......... done [s15amd64-setuptools2-job-05] | `-- Installing qt5-opengl-5.15.19p96... [s15amd64-setuptools2-job-05] | `-- Extracting qt5-opengl-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-multimedia-5.15.19p2: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-quick3d-5.15.19p1... [s15amd64-setuptools2-job-05] | `-- Installing assimp-6.0.5... [s15amd64-setuptools2-job-05] | | `-- Installing minizip-1.3.1... [s15amd64-setuptools2-job-05] | | `-- Extracting minizip-1.3.1: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting assimp-6.0.5: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-quick3d-5.15.19p1: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-remoteobjects-5.15.19p0... [s15amd64-setuptools2-job-05] `-- Extracting qt5-remoteobjects-5.15.19p0: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-sensors-5.15.19p0... [s15amd64-setuptools2-job-05] `-- Extracting qt5-sensors-5.15.19p0: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-speech-5.15.19p1... [s15amd64-setuptools2-job-05] | `-- Installing speech-dispatcher-0.12.1_1... [s15amd64-setuptools2-job-05] | | `-- Installing dotconf-1.4.1_1... [s15amd64-setuptools2-job-05] | | `-- Extracting dotconf-1.4.1_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing espeak-ng-1.52.0_1... [s15amd64-setuptools2-job-05] | | `-- Installing pcaudiolib-1.2_2... [s15amd64-setuptools2-job-05] | | `-- Extracting pcaudiolib-1.2_2: ........ done [s15amd64-setuptools2-job-05] | | `-- Extracting espeak-ng-1.52.0_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libsndfile-1.2.2.20251216... [s15amd64-setuptools2-job-05] | | `-- Installing flac-1.5.0,1... [s15amd64-setuptools2-job-05] | | | `-- Installing libogg-1.3.6,4... [s15amd64-setuptools2-job-05] | | | `-- Extracting libogg-1.3.6,4: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting flac-1.5.0,1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing lame-3.100_5... [s15amd64-setuptools2-job-05] | | `-- Extracting lame-3.100_5: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libvorbis-1.3.7_2,3... [s15amd64-setuptools2-job-05] | | `-- Extracting libvorbis-1.3.7_2,3: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing mpg123-1.33.6... [s15amd64-setuptools2-job-05] | | `-- Extracting mpg123-1.33.6: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing opus-1.6.1... [s15amd64-setuptools2-job-05] | | `-- Extracting opus-1.6.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting libsndfile-1.2.2.20251216: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing pulseaudio-17.0_4... [s15amd64-setuptools2-job-05] | | `-- Installing consolekit2-2.0.0_1... [s15amd64-setuptools2-job-05] | | | `-- Installing polkit-127... [s15amd64-setuptools2-job-05] | | | `-- Installing duktape-lib-2.7.0_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting duktape-lib-2.7.0_1: ......... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [s15amd64-setuptools2-job-05] | | | `-- Extracting polkit-127: ......... done [s15amd64-setuptools2-job-05] | | `-- Extracting consolekit2-2.0.0_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing fftw3-3.3.10_5... [s15amd64-setuptools2-job-05] | | `-- Extracting fftw3-3.3.10_5: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing fftw3-float-3.3.10_5... [s15amd64-setuptools2-job-05] | | `-- Extracting fftw3-float-3.3.10_5: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libXtst-1.2.5... [s15amd64-setuptools2-job-05] | | `-- Extracting libXtst-1.2.5: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libltdl-2.5.4... [s15amd64-setuptools2-job-05] | | `-- Extracting libltdl-2.5.4: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libsoxr-0.1.3_3... [s15amd64-setuptools2-job-05] | | `-- Extracting libsoxr-0.1.3_3: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing speexdsp-1.2.1... [s15amd64-setuptools2-job-05] | | `-- Extracting speexdsp-1.2.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing webrtc-audio-processing-1.3_1... [s15amd64-setuptools2-job-05] | | | `-- Installing abseil-20250127.1_1... [s15amd64-setuptools2-job-05] | | | `-- Extracting abseil-20250127.1_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Extracting webrtc-audio-processing-1.3_1: .......... done ===> Creating groups Creating group 'pulse' with gid '563' Creating group 'pulse-access' with gid '564' Creating group 'pulse-rt' with gid '557' ===> Creating users Creating user 'pulse' with uid '563' [s15amd64-setuptools2-job-05] | | `-- Extracting pulseaudio-17.0_4: .......... done [s15amd64-setuptools2-job-05] | `-- Extracting speech-dispatcher-0.12.1_1: .......... done [s15amd64-setuptools2-job-05] `-- Extracting qt5-speech-5.15.19p1: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-svg-5.15.19p5... [s15amd64-setuptools2-job-05] `-- Extracting qt5-svg-5.15.19p5: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-testlib-5.15.19p96... [s15amd64-setuptools2-job-05] `-- Extracting qt5-testlib-5.15.19p96: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-webchannel-5.15.19p3... [s15amd64-setuptools2-job-05] `-- Extracting qt5-webchannel-5.15.19p3: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-websockets-5.15.19p2... [s15amd64-setuptools2-job-05] `-- Extracting qt5-websockets-5.15.19p2: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-x11extras-5.15.19p0... [s15amd64-setuptools2-job-05] `-- Extracting qt5-x11extras-5.15.19p0: .......... done [s15amd64-setuptools2-job-05] `-- Installing qt5-xmlpatterns-5.15.19p0... [s15amd64-setuptools2-job-05] `-- Extracting qt5-xmlpatterns-5.15.19p0: .......... done [s15amd64-setuptools2-job-05] Extracting py312-qt5-pyqt-5.15.11_2: .......... done ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.14.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from wayland-1.24.0_2: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.13.2: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from qt5-sql-5.15.19p96: -- To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS ===== Message from alsa-plugins-1.2.12_2: -- ===> NOTICE: The alsa-plugins port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from pulseaudio-17.0_4: -- Pulseaudio tries to determine default values for FreeBSD OSS driver at first start, based on /dev/sndstat output. The hw.snd.default_unit sysctl may affect these values, but restart of the Pulseaudio might be needed to rescan it again, e.g. `pacmd exit`. Pulseaudio has separate input and output configure lines. You can change them with using following commands: To change the default sink (output): # pacmd set-default-sink 3 To change the default source (input): # pacmd set-default-source 3 This can also be set in /usr/local/etc/pulse/default.pa Replace the number '3' with the new default you want to set. The audio/freedesktop-sound-theme is needed if the default sound files are uncommented in the /usr/local/etc/pulse/default.pa file. ===> py312-ete3-3.1.3_5 depends on package: py312-qt5-pyqt>=5.15.11 - found ===> Returning to build of py312-ete3-3.1.3_5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py312-ete3-3.1.3_5 /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py312-ete3-3.1.3_5 /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating build/lib/ete3 copying ete3/_ph.py -> build/lib/ete3 copying ete3/__init__.py -> build/lib/ete3 copying ete3/version.py -> build/lib/ete3 copying ete3/utils.py -> build/lib/ete3 copying ete3/citation.py -> build/lib/ete3 running egg_info writing ete3.egg-info/PKG-INFO writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt writing top-level names to ete3.egg-info/top_level.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'ete3.egg-info/SOURCES.txt' /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.clustering' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.clustering' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.clustering' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.clustering' to be distributed and are already explicitly excluding 'ete3.clustering' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.coretype' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.coretype' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.coretype' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.coretype' to be distributed and are already explicitly excluding 'ete3.coretype' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.evol' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.evol' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.evol' to be distributed and are already explicitly excluding 'ete3.evol' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.evol.parser' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol.parser' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.evol.parser' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.evol.parser' to be distributed and are already explicitly excluding 'ete3.evol.parser' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.ncbi_taxonomy' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.ncbi_taxonomy' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.ncbi_taxonomy' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.ncbi_taxonomy' to be distributed and are already explicitly excluding 'ete3.ncbi_taxonomy' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.nexml' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.nexml' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.nexml' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.nexml' to be distributed and are already explicitly excluding 'ete3.nexml' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.orthoxml' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.orthoxml' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.orthoxml' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.orthoxml' to be distributed and are already explicitly excluding 'ete3.orthoxml' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.parser' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.parser' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.parser' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.parser' to be distributed and are already explicitly excluding 'ete3.parser' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.phylo' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylo' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.phylo' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.phylo' to be distributed and are already explicitly excluding 'ete3.phylo' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.phylomedb' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylomedb' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.phylomedb' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.phylomedb' to be distributed and are already explicitly excluding 'ete3.phylomedb' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.phyloxml' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phyloxml' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.phyloxml' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.phyloxml' to be distributed and are already explicitly excluding 'ete3.phyloxml' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test' to be distributed and are already explicitly excluding 'ete3.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.CladeModelCD' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.CladeModelCD' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.CladeModelCD' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.CladeModelCD' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.CladeModelCD' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.L_example' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.L_example' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.L_example' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.L_example' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.L_example' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.M1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.M1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.M1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.M1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.M2' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M2' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.M2' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.M2' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.M2' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.bsA' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.bsA' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.bsA' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.bsA1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.bsA1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.bsA1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.fb' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.fb' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.fb' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.fb' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.fb' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.XS_example' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.XS_example' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.XS_example' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.XS_example' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.XS_example' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.slr' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.slr' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.slr' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.slr' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.slr' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.test_ete_build' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_ete_build' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.test_ete_build' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.test_ete_build' to be distributed and are already explicitly excluding 'ete3.test.test_ete_build' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.test_issue258' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_issue258' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.test_issue258' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.test_issue258' to be distributed and are already explicitly excluding 'ete3.test.test_issue258' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.test_treeview' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_treeview' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.test_treeview' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.test_treeview' to be distributed and are already explicitly excluding 'ete3.test.test_treeview' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools' to be distributed and are already explicitly excluding 'ete3.tools' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools.ete_build_lib' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools.ete_build_lib' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools.ete_build_lib' to be distributed and are already explicitly excluding 'ete3.tools.ete_build_lib' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools.ete_build_lib.task' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.task' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools.ete_build_lib.task' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools.ete_build_lib.task' to be distributed and are already explicitly excluding 'ete3.tools.ete_build_lib.task' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools.ete_build_lib.workflow' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.workflow' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools.ete_build_lib.workflow' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools.ete_build_lib.workflow' to be distributed and are already explicitly excluding 'ete3.tools.ete_build_lib.workflow' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.treeview' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.treeview' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.treeview' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.treeview' to be distributed and are already explicitly excluding 'ete3.treeview' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.webplugin' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.webplugin' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.webplugin' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.webplugin' to be distributed and are already explicitly excluding 'ete3.webplugin' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/ete3/clustering copying ete3/clustering/__init__.py -> build/lib/ete3/clustering copying ete3/clustering/clustertree.py -> build/lib/ete3/clustering copying ete3/clustering/clustvalidation.py -> build/lib/ete3/clustering creating build/lib/ete3/coretype copying ete3/coretype/__init__.py -> build/lib/ete3/coretype copying ete3/coretype/arraytable.py -> build/lib/ete3/coretype copying ete3/coretype/seqgroup.py -> build/lib/ete3/coretype copying ete3/coretype/tree.py -> build/lib/ete3/coretype creating build/lib/ete3/evol copying ete3/evol/__init__.py -> build/lib/ete3/evol copying ete3/evol/control.py -> build/lib/ete3/evol copying ete3/evol/evoltree.py -> build/lib/ete3/evol copying ete3/evol/model.py -> build/lib/ete3/evol copying ete3/evol/utils.py -> build/lib/ete3/evol creating build/lib/ete3/evol/parser copying ete3/evol/parser/__init__.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/codemlparser.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/slrparser.py -> build/lib/ete3/evol/parser creating build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/__init__.py -> build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/ncbiquery.py -> build/lib/ete3/ncbi_taxonomy creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests creating build/lib/ete3/nexml copying ete3/nexml/__init__.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml_tree.py -> build/lib/ete3/nexml creating build/lib/ete3/orthoxml copying ete3/orthoxml/__init__.py -> build/lib/ete3/orthoxml copying ete3/orthoxml/_orthoxml.py -> build/lib/ete3/orthoxml creating build/lib/ete3/parser copying ete3/parser/__init__.py -> build/lib/ete3/parser copying ete3/parser/fasta.py -> build/lib/ete3/parser copying ete3/parser/newick.py -> build/lib/ete3/parser copying ete3/parser/paml.py -> build/lib/ete3/parser copying ete3/parser/phylip.py -> build/lib/ete3/parser copying ete3/parser/text_arraytable.py -> build/lib/ete3/parser creating build/lib/ete3/phylo copying ete3/phylo/__init__.py -> build/lib/ete3/phylo copying ete3/phylo/evolevents.py -> build/lib/ete3/phylo copying ete3/phylo/phylotree.py -> build/lib/ete3/phylo copying ete3/phylo/reconciliation.py -> build/lib/ete3/phylo copying ete3/phylo/spoverlap.py -> build/lib/ete3/phylo creating build/lib/ete3/phylomedb copying ete3/phylomedb/__init__.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB3.py -> build/lib/ete3/phylomedb creating build/lib/ete3/phyloxml copying ete3/phyloxml/__init__.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml_tree.py -> build/lib/ete3/phyloxml creating build/lib/ete3/test copying ete3/test/__init__.py -> build/lib/ete3/test copying ete3/test/datasets.py -> build/lib/ete3/test copying ete3/test/test_all.py -> build/lib/ete3/test copying ete3/test/test_api.py -> build/lib/ete3/test copying ete3/test/test_arraytable.py -> build/lib/ete3/test copying ete3/test/test_circle_label.py -> build/lib/ete3/test copying ete3/test/test_clustertree.py -> build/lib/ete3/test copying ete3/test/test_ete_evol.py -> build/lib/ete3/test copying ete3/test/test_evol.py -> build/lib/ete3/test copying ete3/test/test_interop.py -> build/lib/ete3/test copying ete3/test/test_ncbiquery.py -> build/lib/ete3/test copying ete3/test/test_phylotree.py -> build/lib/ete3/test copying ete3/test/test_seqgroup.py -> build/lib/ete3/test copying ete3/test/test_tree.py -> build/lib/ete3/test copying ete3/test/test_xml_parsers.py -> build/lib/ete3/test creating build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> build/lib/ete3/test/ete_evol_data/CladeModelCD creating build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> build/lib/ete3/test/ete_evol_data/L_example creating build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/tree.nw -> build/lib/ete3/test/ete_evol_data/S_example creating build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb creating build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/tree.nw -> build/lib/ete3/test/ete_evol_data/XS_example creating build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr creating build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.aa.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.alg.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__init__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__main__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_cogs.tsv -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_genetree.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_manual_alg.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_modeltest.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_sptree.py -> build/lib/ete3/test/test_ete_build creating build/lib/ete3/test/test_issue258 copying ete3/test/test_issue258/issue258.py -> build/lib/ete3/test/test_issue258 creating build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/__init__.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barchart_and_piechart_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barcharts.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/chimp.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/dog.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_grid.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_positions.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_rotation.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fish.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/float_piechart.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/floating_piecharts.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fly.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/human.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/motifs.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/mouse.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/new_seq_face.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/phylotree_visualization.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/random_draw.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/rotated_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seqmotif.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/test_all_treeview.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.py -> build/lib/ete3/test/test_treeview creating build/lib/ete3/tools copying ete3/tools/__init__.py -> build/lib/ete3/tools copying ete3/tools/common.py -> build/lib/ete3/tools copying ete3/tools/ete.py -> build/lib/ete3/tools copying ete3/tools/ete_annotate.py -> build/lib/ete3/tools copying ete3/tools/ete_build.cfg -> build/lib/ete3/tools copying ete3/tools/ete_build.py -> build/lib/ete3/tools copying ete3/tools/ete_compare.py -> build/lib/ete3/tools copying ete3/tools/ete_evol.py -> build/lib/ete3/tools copying ete3/tools/ete_expand.py -> build/lib/ete3/tools copying ete3/tools/ete_extract.py -> build/lib/ete3/tools copying ete3/tools/ete_generate.py -> build/lib/ete3/tools copying ete3/tools/ete_maptrees.py -> build/lib/ete3/tools copying ete3/tools/ete_mod.py -> build/lib/ete3/tools copying ete3/tools/ete_ncbiquery.py -> build/lib/ete3/tools copying ete3/tools/ete_split.py -> build/lib/ete3/tools copying ete3/tools/ete_upgrade_tools.py -> build/lib/ete3/tools copying ete3/tools/ete_view.py -> build/lib/ete3/tools copying ete3/tools/utils.py -> build/lib/ete3/tools creating build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/__init__.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/apps.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configcheck.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configobj.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/curses_gui.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/db.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/errors.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/getch.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/interface.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/logger.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_job.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_task.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/ordereddict.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/scheduler.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/seqio.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/sge.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/utils.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/validate.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/visualize.py -> build/lib/ete3/tools/ete_build_lib creating build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/__init__.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/clustalo.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_creator.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_selector.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/concat_alg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dialigntx.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummyalg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummytree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/fasttree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/iqtree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/jmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/mafft.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/merger.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/meta_aligner.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/msf.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/muscle.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/phyml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/pmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest2.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/raxml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/tcoffee.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/trimal.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/uhire.py -> build/lib/ete3/tools/ete_build_lib/task creating build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/__init__.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/common.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/genetree.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/supermatrix.py -> build/lib/ete3/tools/ete_build_lib/workflow creating build/lib/ete3/treeview copying ete3/treeview/__init__.py -> build/lib/ete3/treeview copying ete3/treeview/_about.py -> build/lib/ete3/treeview copying ete3/treeview/_mainwindow.py -> build/lib/ete3/treeview copying ete3/treeview/_open_newick.py -> build/lib/ete3/treeview copying ete3/treeview/_search_dialog.py -> build/lib/ete3/treeview copying ete3/treeview/_show_codeml.py -> build/lib/ete3/treeview copying ete3/treeview/_show_newick.py -> build/lib/ete3/treeview copying ete3/treeview/about.ui -> build/lib/ete3/treeview copying ete3/treeview/clean_search.png -> build/lib/ete3/treeview copying ete3/treeview/drawer.py -> build/lib/ete3/treeview copying ete3/treeview/ete_icon.png -> build/lib/ete3/treeview copying ete3/treeview/ete_logo.png -> build/lib/ete3/treeview copying ete3/treeview/ete_qt4app.ui -> build/lib/ete3/treeview copying ete3/treeview/ete_resources.qrc -> build/lib/ete3/treeview copying ete3/treeview/ete_resources_rc.py -> build/lib/ete3/treeview copying ete3/treeview/export_pdf.png -> build/lib/ete3/treeview copying ete3/treeview/faces.py -> build/lib/ete3/treeview copying ete3/treeview/fileopen.png -> build/lib/ete3/treeview copying ete3/treeview/filesave.png -> build/lib/ete3/treeview copying ete3/treeview/fit_region.png -> build/lib/ete3/treeview copying ete3/treeview/fit_tree.png -> build/lib/ete3/treeview copying ete3/treeview/force_topo.png -> build/lib/ete3/treeview copying ete3/treeview/image_properties.ui -> build/lib/ete3/treeview copying ete3/treeview/layouts.py -> build/lib/ete3/treeview copying ete3/treeview/main.py -> build/lib/ete3/treeview copying ete3/treeview/node_gui_actions.py -> build/lib/ete3/treeview copying ete3/treeview/open_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/qt.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_circular_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_compile_resources.sh -> build/lib/ete3/treeview copying ete3/treeview/qt4_face_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_gui.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_rect_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_render.py -> build/lib/ete3/treeview copying ete3/treeview/search.png -> build/lib/ete3/treeview copying ete3/treeview/search_dialog.ui -> build/lib/ete3/treeview copying ete3/treeview/show_dist.png -> build/lib/ete3/treeview copying ete3/treeview/show_names.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/show_support.png -> build/lib/ete3/treeview copying ete3/treeview/svg_colors.py -> build/lib/ete3/treeview copying ete3/treeview/templates.py -> build/lib/ete3/treeview copying ete3/treeview/x_expand.png -> build/lib/ete3/treeview copying ete3/treeview/x_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/y_expand.png -> build/lib/ete3/treeview copying ete3/treeview/y_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_in.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_out.png -> build/lib/ete3/treeview creating build/lib/ete3/webplugin copying ete3/webplugin/__init__.py -> build/lib/ete3/webplugin copying ete3/webplugin/webapp.py -> build/lib/ete3/webplugin =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ete3-3.1.3_5 depends on package: py312-numpy>=1.16 - found ===> py312-ete3-3.1.3_5 depends on package: py312-lxml>0 - found ===> py312-ete3-3.1.3_5 depends on package: py312-six>0 - found ===> py312-ete3-3.1.3_5 depends on file: /usr/local/bin/python3.12 - found ===> py312-ete3-3.1.3_5 depends on package: py312-qt5-pyqt>=5.15.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py312-ete3-3.1.3_5 ===> Generating temporary packing list /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License (GPL) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/local/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying ete3/_ph.py -> build/lib/ete3 copying ete3/__init__.py -> build/lib/ete3 copying ete3/version.py -> build/lib/ete3 copying ete3/utils.py -> build/lib/ete3 copying ete3/citation.py -> build/lib/ete3 running egg_info writing ete3.egg-info/PKG-INFO writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt writing top-level names to ete3.egg-info/top_level.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'ete3.egg-info/SOURCES.txt' /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.clustering' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.clustering' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.clustering' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.clustering' to be distributed and are already explicitly excluding 'ete3.clustering' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.coretype' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.coretype' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.coretype' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.coretype' to be distributed and are already explicitly excluding 'ete3.coretype' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.evol' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.evol' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.evol' to be distributed and are already explicitly excluding 'ete3.evol' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.evol.parser' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol.parser' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.evol.parser' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.evol.parser' to be distributed and are already explicitly excluding 'ete3.evol.parser' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.ncbi_taxonomy' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.ncbi_taxonomy' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.ncbi_taxonomy' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.ncbi_taxonomy' to be distributed and are already explicitly excluding 'ete3.ncbi_taxonomy' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.nexml' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.nexml' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.nexml' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.nexml' to be distributed and are already explicitly excluding 'ete3.nexml' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.orthoxml' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.orthoxml' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.orthoxml' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.orthoxml' to be distributed and are already explicitly excluding 'ete3.orthoxml' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.parser' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.parser' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.parser' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.parser' to be distributed and are already explicitly excluding 'ete3.parser' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.phylo' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylo' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.phylo' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.phylo' to be distributed and are already explicitly excluding 'ete3.phylo' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.phylomedb' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylomedb' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.phylomedb' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.phylomedb' to be distributed and are already explicitly excluding 'ete3.phylomedb' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.phyloxml' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phyloxml' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.phyloxml' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.phyloxml' to be distributed and are already explicitly excluding 'ete3.phyloxml' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test' to be distributed and are already explicitly excluding 'ete3.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.CladeModelCD' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.CladeModelCD' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.CladeModelCD' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.CladeModelCD' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.CladeModelCD' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.L_example' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.L_example' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.L_example' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.L_example' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.L_example' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.M1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.M1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.M1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.M1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.M2' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M2' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.M2' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.M2' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.M2' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.bsA' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.bsA' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.bsA' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.bsA1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.bsA1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.bsA1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.S_example.paml.fb' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.fb' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.S_example.paml.fb' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.S_example.paml.fb' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.S_example.paml.fb' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.XS_example' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.XS_example' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.XS_example' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.XS_example' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.XS_example' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.ete_evol_data.protamine.PRM1.slr' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.slr' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.slr' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.ete_evol_data.protamine.PRM1.slr' to be distributed and are already explicitly excluding 'ete3.test.ete_evol_data.protamine.PRM1.slr' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.test_ete_build' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_ete_build' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.test_ete_build' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.test_ete_build' to be distributed and are already explicitly excluding 'ete3.test.test_ete_build' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.test_issue258' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_issue258' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.test_issue258' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.test_issue258' to be distributed and are already explicitly excluding 'ete3.test.test_issue258' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.test.test_treeview' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_treeview' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.test.test_treeview' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.test.test_treeview' to be distributed and are already explicitly excluding 'ete3.test.test_treeview' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools' to be distributed and are already explicitly excluding 'ete3.tools' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools.ete_build_lib' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools.ete_build_lib' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools.ete_build_lib' to be distributed and are already explicitly excluding 'ete3.tools.ete_build_lib' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools.ete_build_lib.task' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.task' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools.ete_build_lib.task' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools.ete_build_lib.task' to be distributed and are already explicitly excluding 'ete3.tools.ete_build_lib.task' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.tools.ete_build_lib.workflow' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.workflow' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.tools.ete_build_lib.workflow' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.tools.ete_build_lib.workflow' to be distributed and are already explicitly excluding 'ete3.tools.ete_build_lib.workflow' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.treeview' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.treeview' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.treeview' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.treeview' to be distributed and are already explicitly excluding 'ete3.treeview' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/local/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'ete3.webplugin' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'ete3.webplugin' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'ete3.webplugin' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'ete3.webplugin' to be distributed and are already explicitly excluding 'ete3.webplugin' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying ete3/clustering/__init__.py -> build/lib/ete3/clustering copying ete3/clustering/clustertree.py -> build/lib/ete3/clustering copying ete3/clustering/clustvalidation.py -> build/lib/ete3/clustering copying ete3/coretype/__init__.py -> build/lib/ete3/coretype copying ete3/coretype/arraytable.py -> build/lib/ete3/coretype copying ete3/coretype/seqgroup.py -> build/lib/ete3/coretype copying ete3/coretype/tree.py -> build/lib/ete3/coretype copying ete3/evol/__init__.py -> build/lib/ete3/evol copying ete3/evol/control.py -> build/lib/ete3/evol copying ete3/evol/evoltree.py -> build/lib/ete3/evol copying ete3/evol/model.py -> build/lib/ete3/evol copying ete3/evol/utils.py -> build/lib/ete3/evol copying ete3/evol/parser/__init__.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/codemlparser.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/slrparser.py -> build/lib/ete3/evol/parser copying ete3/ncbi_taxonomy/__init__.py -> build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/ncbiquery.py -> build/lib/ete3/ncbi_taxonomy copying ete3/nexml/__init__.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml_tree.py -> build/lib/ete3/nexml copying ete3/orthoxml/__init__.py -> build/lib/ete3/orthoxml copying ete3/orthoxml/_orthoxml.py -> build/lib/ete3/orthoxml copying ete3/parser/__init__.py -> build/lib/ete3/parser copying ete3/parser/fasta.py -> build/lib/ete3/parser copying ete3/parser/newick.py -> build/lib/ete3/parser copying ete3/parser/paml.py -> build/lib/ete3/parser copying ete3/parser/phylip.py -> build/lib/ete3/parser copying ete3/parser/text_arraytable.py -> build/lib/ete3/parser copying ete3/phylo/__init__.py -> build/lib/ete3/phylo copying ete3/phylo/evolevents.py -> build/lib/ete3/phylo copying ete3/phylo/phylotree.py -> build/lib/ete3/phylo copying ete3/phylo/reconciliation.py -> build/lib/ete3/phylo copying ete3/phylo/spoverlap.py -> build/lib/ete3/phylo copying ete3/phylomedb/__init__.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB3.py -> build/lib/ete3/phylomedb copying ete3/phyloxml/__init__.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml_tree.py -> build/lib/ete3/phyloxml copying ete3/test/__init__.py -> build/lib/ete3/test copying ete3/test/datasets.py -> build/lib/ete3/test copying ete3/test/test_all.py -> build/lib/ete3/test copying ete3/test/test_api.py -> build/lib/ete3/test copying ete3/test/test_arraytable.py -> build/lib/ete3/test copying ete3/test/test_circle_label.py -> build/lib/ete3/test copying ete3/test/test_clustertree.py -> build/lib/ete3/test copying ete3/test/test_ete_evol.py -> build/lib/ete3/test copying ete3/test/test_evol.py -> build/lib/ete3/test copying ete3/test/test_interop.py -> build/lib/ete3/test copying ete3/test/test_ncbiquery.py -> build/lib/ete3/test copying ete3/test/test_phylotree.py -> build/lib/ete3/test copying ete3/test/test_seqgroup.py -> build/lib/ete3/test copying ete3/test/test_tree.py -> build/lib/ete3/test copying ete3/test/test_xml_parsers.py -> build/lib/ete3/test copying ete3/test/test_ete_build/__init__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__main__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_genetree.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_manual_alg.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_modeltest.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_sptree.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_issue258/issue258.py -> build/lib/ete3/test/test_issue258 copying ete3/test/test_treeview/__init__.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barchart_and_piechart_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_grid.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_positions.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_rotation.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/floating_piecharts.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/new_seq_face.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/phylotree_visualization.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/random_draw.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/test_all_treeview.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.py -> build/lib/ete3/test/test_treeview copying ete3/tools/__init__.py -> build/lib/ete3/tools copying ete3/tools/common.py -> build/lib/ete3/tools copying ete3/tools/ete.py -> build/lib/ete3/tools copying ete3/tools/ete_annotate.py -> build/lib/ete3/tools copying ete3/tools/ete_build.py -> build/lib/ete3/tools copying ete3/tools/ete_compare.py -> build/lib/ete3/tools copying ete3/tools/ete_evol.py -> build/lib/ete3/tools copying ete3/tools/ete_expand.py -> build/lib/ete3/tools copying ete3/tools/ete_extract.py -> build/lib/ete3/tools copying ete3/tools/ete_generate.py -> build/lib/ete3/tools copying ete3/tools/ete_maptrees.py -> build/lib/ete3/tools copying ete3/tools/ete_mod.py -> build/lib/ete3/tools copying ete3/tools/ete_ncbiquery.py -> build/lib/ete3/tools copying ete3/tools/ete_split.py -> build/lib/ete3/tools copying ete3/tools/ete_upgrade_tools.py -> build/lib/ete3/tools copying ete3/tools/ete_view.py -> build/lib/ete3/tools copying ete3/tools/utils.py -> build/lib/ete3/tools copying ete3/tools/ete_build_lib/__init__.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/apps.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configcheck.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configobj.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/curses_gui.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/db.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/errors.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/getch.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/interface.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/logger.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_job.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_task.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/ordereddict.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/scheduler.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/seqio.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/sge.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/utils.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/validate.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/visualize.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/task/__init__.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/clustalo.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_creator.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_selector.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/concat_alg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dialigntx.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummyalg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummytree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/fasttree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/iqtree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/jmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/mafft.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/merger.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/meta_aligner.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/msf.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/muscle.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/phyml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/pmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest2.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/raxml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/tcoffee.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/trimal.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/uhire.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/workflow/__init__.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/common.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/genetree.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/supermatrix.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/treeview/__init__.py -> build/lib/ete3/treeview copying ete3/treeview/_about.py -> build/lib/ete3/treeview copying ete3/treeview/_mainwindow.py -> build/lib/ete3/treeview copying ete3/treeview/_open_newick.py -> build/lib/ete3/treeview copying ete3/treeview/_search_dialog.py -> build/lib/ete3/treeview copying ete3/treeview/_show_codeml.py -> build/lib/ete3/treeview copying ete3/treeview/_show_newick.py -> build/lib/ete3/treeview copying ete3/treeview/drawer.py -> build/lib/ete3/treeview copying ete3/treeview/ete_resources_rc.py -> build/lib/ete3/treeview copying ete3/treeview/faces.py -> build/lib/ete3/treeview copying ete3/treeview/layouts.py -> build/lib/ete3/treeview copying ete3/treeview/main.py -> build/lib/ete3/treeview copying ete3/treeview/node_gui_actions.py -> build/lib/ete3/treeview copying ete3/treeview/qt.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_circular_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_face_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_gui.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_rect_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_render.py -> build/lib/ete3/treeview copying ete3/treeview/svg_colors.py -> build/lib/ete3/treeview copying ete3/treeview/templates.py -> build/lib/ete3/treeview copying ete3/webplugin/__init__.py -> build/lib/ete3/webplugin copying ete3/webplugin/webapp.py -> build/lib/ete3/webplugin running install_lib creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3 copying build/lib/ete3/_ph.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3 copying build/lib/ete3/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3 copying build/lib/ete3/version.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/webapp.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/webplugin creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_in.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_circular_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/filesave.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_expand.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/main.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/about.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/templates.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/fileopen.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/layouts.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/_open_newick.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_compile_resources.sh -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources.qrc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/_mainwindow.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_reduce.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/image_properties.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/search.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_out.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_face_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/force_topo.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/open_newick.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_support.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_newick.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_dist.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_names.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_rect_render.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_qt4app.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/svg_colors.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/_about.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_region.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_codeml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/drawer.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_gui.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_reduce.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/search_dialog.ui -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_expand.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources_rc.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_logo.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_tree.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/export_pdf.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_icon.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/clean_search.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/_search_dialog.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview copying build/lib/ete3/treeview/node_gui_actions.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser copying build/lib/ete3/parser/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser copying build/lib/ete3/parser/phylip.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser copying build/lib/ete3/parser/text_arraytable.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser copying build/lib/ete3/parser/paml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser copying build/lib/ete3/parser/fasta.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser copying build/lib/ete3/parser/newick.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml_tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_expand.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_evol.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/db.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/visualize.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/seqio.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/curses_gui.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_job.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/getch.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/interface.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configcheck.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configobj.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/apps.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/supermatrix.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/common.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/genetree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/validate.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/logger.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/sge.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/ordereddict.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_task.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/errors.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/scheduler.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/phyml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/clustalo.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/tcoffee.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/msf.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummytree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/iqtree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/jmodeltest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummyalg.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/muscle.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/fasttree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/merger.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dialigntx.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/concat_alg.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_creator.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/uhire.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/mafft.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/trimal.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/raxml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_selector.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/meta_aligner.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest2.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/pmodeltest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/common.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.cfg -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_maptrees.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_mod.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_ncbiquery.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_compare.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_annotate.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_extract.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_upgrade_tools.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_generate.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_view.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools copying build/lib/ete3/tools/ete_split.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml copying build/lib/ete3/nexml/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml_tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/ncbiquery.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo copying build/lib/ete3/phylo/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo copying build/lib/ete3/phylo/spoverlap.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo copying build/lib/ete3/phylo/evolevents.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo copying build/lib/ete3/phylo/reconciliation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo copying build/lib/ete3/phylo/phylotree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustertree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering copying build/lib/ete3/clustering/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustvalidation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering copying build/lib/ete3/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB3.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_arraytable.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_sptree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_cogs.tsv -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.alg.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_manual_alg.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__main__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_modeltest.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_genetree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.aa.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.nt.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.fa -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_clustertree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_seqgroup.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_interop.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_all.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/test_issue258/issue258.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/mouse.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barchart_and_piechart_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/rotated_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_rotation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/test_all_treeview.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/new_seq_face.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_grid.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barcharts.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/random_draw.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/human.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fish.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/floating_piecharts.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_positions.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fly.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/chimp.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/phylotree_visualization.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/dog.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/motifs.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/float_piechart.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seqmotif.png -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_ete_evol.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/datasets.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example copying build/lib/ete3/test/ete_evol_data/S_example/ali.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/fb creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/S_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/ali.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/XS_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/L_example creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/test_xml_parsers.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_api.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_phylotree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_circle_label.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_ncbiquery.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/test/test_evol.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test copying build/lib/ete3/citation.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3 creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol copying build/lib/ete3/evol/evoltree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol copying build/lib/ete3/evol/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/codemlparser.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/slrparser.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser copying build/lib/ete3/evol/model.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol copying build/lib/ete3/evol/utils.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol copying build/lib/ete3/evol/control.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype copying build/lib/ete3/coretype/tree.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype copying build/lib/ete3/coretype/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype copying build/lib/ete3/coretype/arraytable.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype copying build/lib/ete3/coretype/seqgroup.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/_orthoxml.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/__init__.py -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/orthoxml byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/_ph.py to _ph.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/version.py to version.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/webplugin/webapp.py to webapp.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/webplugin/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/qt4_circular_render.py to qt4_circular_render.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/main.py to main.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/templates.py to templates.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/qt4_render.py to qt4_render.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/layouts.py to layouts.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/_open_newick.py to _open_newick.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/faces.py to faces.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/treeview/faces.py:178: SyntaxWarning: invalid escape sequence '\_' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/_mainwindow.py to _mainwindow.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/qt4_face_render.py to qt4_face_render.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/_show_newick.py to _show_newick.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/qt4_rect_render.py to qt4_rect_render.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/qt.py to qt.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/svg_colors.py to svg_colors.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/_about.py to _about.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/_show_codeml.py to _show_codeml.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/drawer.py to drawer.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/qt4_gui.py to qt4_gui.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/ete_resources_rc.py to ete_resources_rc.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/_search_dialog.py to _search_dialog.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/treeview/node_gui_actions.py to node_gui_actions.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py to phylip.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:76: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:108: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:123: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:138: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser/text_arraytable.py to text_arraytable.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser/paml.py to paml.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser/fasta.py to fasta.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/parser/newick.py to newick.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:51: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:54: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:55: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:402: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml/_phyloxml.py to _phyloxml.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phyloxml/_phyloxml_tree.py to _phyloxml_tree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_expand.py to ete_expand.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_evol.py to ete_evol.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/db.py to db.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/visualize.py to visualize.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/visualize.py:201: SyntaxWarning: invalid escape sequence '\{' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/visualize.py:205: SyntaxWarning: invalid escape sequence '\{' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/seqio.py to seqio.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/curses_gui.py to curses_gui.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/master_job.py to master_job.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/getch.py to getch.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/interface.py to interface.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/interface.py:114: SyntaxWarning: invalid escape sequence '\d' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/configcheck.py to configcheck.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/configobj.py to configobj.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/apps.py to apps.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow/supermatrix.py to supermatrix.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow/common.py to common.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow/genetree.py to genetree.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow/genetree.py:163: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/validate.py to validate.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/logger.py to logger.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py to utils.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:375: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:519: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:538: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:629: SyntaxWarning: invalid escape sequence '\[' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/sge.py to sge.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/sge.py:56: SyntaxWarning: invalid escape sequence '\d' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/ordereddict.py to ordereddict.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/master_task.py to master_task.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/errors.py to errors.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/scheduler.py to scheduler.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/phyml.py to phyml.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/phyml.py:170: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/clustalo.py to clustalo.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/tcoffee.py to tcoffee.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/msf.py to msf.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/dummytree.py to dummytree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/iqtree.py to iqtree.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/iqtree.py:77: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/jmodeltest.py to jmodeltest.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/prottest.py to prottest.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/prottest.py:135: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/dummyalg.py to dummyalg.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/muscle.py to muscle.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/fasttree.py to fasttree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/merger.py to merger.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/dialigntx.py to dialigntx.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/concat_alg.py to concat_alg.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/cog_creator.py to cog_creator.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/uhire.py to uhire.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/mafft.py to mafft.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/trimal.py to trimal.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/raxml.py to raxml.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/raxml.py:271: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/raxml.py:274: SyntaxWarning: invalid escape sequence '\d' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/cog_selector.py to cog_selector.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/meta_aligner.py to meta_aligner.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/prottest2.py to prottest2.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/prottest2.py:139: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/pmodeltest.py to pmodeltest.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/common.py to common.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/common.py:158: SyntaxWarning: invalid escape sequence '\w' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_maptrees.py to ete_maptrees.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_build.py to ete_build.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build.py:818: SyntaxWarning: invalid escape sequence '\s' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_mod.py to ete_mod.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_ncbiquery.py to ete_ncbiquery.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_compare.py to ete_compare.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_annotate.py to ete_annotate.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_extract.py to ete_extract.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_upgrade_tools.py to ete_upgrade_tools.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete.py to ete.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/utils.py to utils.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/utils.py:28: SyntaxWarning: invalid escape sequence '\[' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_generate.py to ete_generate.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py to ete_view.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:209: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:275: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:372: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:392: SyntaxWarning: invalid escape sequence '\(' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/tools/ete_split.py to ete_split.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml/_nexml.py to _nexml.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/nexml/_nexml_tree.py to _nexml_tree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/ncbi_taxonomy/ncbiquery.py to ncbiquery.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo/spoverlap.py to spoverlap.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo/evolevents.py to evolevents.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo/reconciliation.py to reconciliation.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylo/phylotree.py to phylotree.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/phylo/phylotree.py:132: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/phylo/phylotree.py:188: SyntaxWarning: invalid escape sequence '\d' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering/clustertree.py to clustertree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/clustering/clustvalidation.py to clustvalidation.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/utils.py to utils.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/utils.py:82: SyntaxWarning: invalid escape sequence '\[' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py to phylomeDB3.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:75: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:153: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:500: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:756: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:757: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:758: SyntaxWarning: invalid escape sequence '\w' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB.py to phylomeDB.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB.py:255: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB.py:256: SyntaxWarning: invalid escape sequence '\w' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_arraytable.py to test_arraytable.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build/test_sptree.py to test_sptree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build/test_manual_alg.py to test_manual_alg.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build/__main__.py to __main__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build/test_modeltest.py to test_modeltest.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_build/test_genetree.py to test_genetree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_clustertree.py to test_clustertree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_seqgroup.py to test_seqgroup.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_interop.py to test_interop.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_all.py to test_all.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_issue258/issue258.py to issue258.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/barchart_and_piechart_faces.py to barchart_and_piechart_faces.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/face_rotation.py to face_rotation.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/test_all_treeview.py to test_all_treeview.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/node_style.py to node_style.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/new_seq_face.py to new_seq_face.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/face_grid.py to face_grid.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/img_faces.py to img_faces.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/item_faces.py to item_faces.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/random_draw.py to random_draw.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/tree_faces.py to tree_faces.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/floating_piecharts.py to floating_piecharts.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/node_background.py to node_background.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/face_positions.py to face_positions.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/phylotree_visualization.py to phylotree_visualization.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/seq_motif_faces.py to seq_motif_faces.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_treeview/bubble_map.py to bubble_map.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_tree.py to test_tree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ete_evol.py to test_ete_evol.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/datasets.py to datasets.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_xml_parsers.py to test_xml_parsers.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_api.py to test_api.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_phylotree.py to test_phylotree.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_circle_label.py to test_circle_label.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_ncbiquery.py to test_ncbiquery.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/test/test_evol.py to test_evol.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/citation.py to citation.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/evoltree.py to evoltree.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/evol/evoltree.py:468: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/evol/evoltree.py:471: SyntaxWarning: invalid escape sequence '\[' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py to codemlparser.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:74: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:78: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:82: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:86: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:92: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:217: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:227: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:240: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:245: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:252: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:258: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:264: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:265: SyntaxWarning: invalid escape sequence '\d' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/parser/slrparser.py to slrparser.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/model.py to model.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/evol/model.py:367: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/evol/model.py:368: SyntaxWarning: invalid escape sequence '\.' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/utils.py to utils.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/evol/control.py to control.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py to tree.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py:387: SyntaxWarning: invalid escape sequence '\-' /usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py:458: SyntaxWarning: invalid escape sequence '\-' /usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py:1527: SyntaxWarning: invalid escape sequence '\-' byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype/arraytable.py to arraytable.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/coretype/seqgroup.py to seqgroup.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/orthoxml/_orthoxml.py to _orthoxml.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3/orthoxml/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmpl7ovmubj.py' /usr/local/bin/python3.12 /tmp/tmpl7ovmubj.py /usr/local/lib/python3.12/site-packages/ete3/treeview/main.py:64: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/treeview/main.py:712: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/treeview/main.py:714: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/treeview/faces.py:178: SyntaxWarning: invalid escape sequence '\_' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:76: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:108: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:123: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/phylip.py:138: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:51: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:54: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:55: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/parser/newick.py:402: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/visualize.py:201: SyntaxWarning: invalid escape sequence '\{' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/visualize.py:205: SyntaxWarning: invalid escape sequence '\{' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/interface.py:114: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/workflow/genetree.py:163: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:375: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:519: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:538: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/utils.py:629: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/sge.py:56: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/phyml.py:170: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/iqtree.py:77: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/prottest.py:135: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/raxml.py:271: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/raxml.py:274: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build_lib/task/prottest2.py:139: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/common.py:158: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_build.py:818: SyntaxWarning: invalid escape sequence '\s' /usr/local/lib/python3.12/site-packages/ete3/tools/utils.py:28: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:209: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:275: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:372: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/tools/ete_view.py:392: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/phylo/phylotree.py:132: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/phylo/phylotree.py:188: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/utils.py:82: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:75: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:153: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:500: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:756: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:757: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB3.py:758: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB.py:255: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/phylomedb/phylomeDB.py:256: SyntaxWarning: invalid escape sequence '\w' /usr/local/lib/python3.12/site-packages/ete3/evol/evoltree.py:468: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/evol/evoltree.py:471: SyntaxWarning: invalid escape sequence '\[' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:74: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:78: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:82: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:86: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:92: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:217: SyntaxWarning: invalid escape sequence '\(' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:227: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:240: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:245: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:252: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:258: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:264: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/parser/codemlparser.py:265: SyntaxWarning: invalid escape sequence '\d' /usr/local/lib/python3.12/site-packages/ete3/evol/model.py:367: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/evol/model.py:368: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py:387: SyntaxWarning: invalid escape sequence '\-' /usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py:458: SyntaxWarning: invalid escape sequence '\-' /usr/local/lib/python3.12/site-packages/ete3/coretype/tree.py:1527: SyntaxWarning: invalid escape sequence '\-' removing /tmp/tmpl7ovmubj.py running install_data creating /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/ete3/tools copying ete3/tools/ete_build.cfg -> /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/ete3/tools running install_egg_info Copying ete3.egg-info to /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/lib/python3.12/site-packages/ete3-3.1.3-py3.12.egg-info running install_scripts Installing ete3 script to /wrkdirs/usr/ports/biology/py-ete3/work-py312/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/biology/py-ete3/work-py312/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/ete3 --> bin/ete3-3.12 Link: @bin/ete3 --> bin/ete3-3.12 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-08T03:54:12+0000' 'PKG_NOTE_ports_top_git_hash=18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=f3b8e6f595d64e7dcfdfe646498d73387575a87c' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py312-ete3-3.1.3_5 ===> Building py312-ete3-3.1.3_5 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py312-ete3-3.1.3_5 build of biology/py-ete3@py312 | py312-ete3-3.1.3_5 ended at Wed Jul 8 12:58:15 JST 2026 build time: 00:04:25