=>> Building science/py-mmcif build started at Wed Jul 8 11:48:12 JST 2026 port directory: /usr/ports/science/py-mmcif package name: py312-mmcif-0.90.0_1 building for: FreeBSD s15amd64-setuptools2-job-07 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 947 Apr 13 23:06 /usr/ports/science/py-mmcif/Makefile Ports top last git commit: 18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a Ports top unclean checkout: yes Port dir last git commit: 1c3394560c4f3b7e3e79480f17b767e3a58bd951 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 07 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=s15amd64-setuptools2 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py312 MAKE_ARGS= FLAVOR=py312 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312/.cache HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mmcif/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-mmcif/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312/.cache HOME=/wrkdirs/usr/ports/science/py-mmcif/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-mmcif/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-mmcif/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py312-mmcif" EXAMPLESDIR="share/examples/py312-mmcif" DATADIR="share/py312-mmcif" WWWDIR="www/py312-mmcif" ETCDIR="etc/py312-mmcif" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py312-mmcif DOCSDIR=/usr/local/share/doc/py312-mmcif EXAMPLESDIR=/usr/local/share/examples/py312-mmcif WWWDIR=/usr/local/www/py312-mmcif ETCDIR=/usr/local/etc/py312-mmcif --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License APACHE20 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-mmcif-0.90.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-07] Installing pkg-2.7.5... [s15amd64-setuptools2-job-07] Extracting pkg-2.7.5: .......... done ===> py312-mmcif-0.90.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py312-mmcif-0.90.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user => mmcif-0.90.0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/m/mmcif/mmcif-0.90.0.tar.gz mmcif-0.90.0.tar.gz 1633 kB 9139 kBps 00s ===> Fetching all distfiles required by py312-mmcif-0.90.0_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py312-mmcif-0.90.0_1 for building => SHA256 Checksum OK for mmcif-0.90.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py312-mmcif-0.90.0_1 for building ===> Extracting for py312-mmcif-0.90.0_1 => SHA256 Checksum OK for mmcif-0.90.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py312-mmcif-0.90.0_1 ===> Applying FreeBSD patches for py312-mmcif-0.90.0_1 from /usr/ports/science/py-mmcif/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-mmcif-0.90.0_1 depends on package: py312-future>0 - not found ===> Installing existing package /packages/All/py312-future-1.0.0.pkg [s15amd64-setuptools2-job-07] Installing py312-future-1.0.0... [s15amd64-setuptools2-job-07] `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-07] | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-07] | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-07] | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-07] | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-07] | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-07] | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-07] | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-07] | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-07] | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing openssl-3.0.21,1... [s15amd64-setuptools2-job-07] | `-- Extracting openssl-3.0.21,1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing readline-8.3.3... [s15amd64-setuptools2-job-07] | `-- Extracting readline-8.3.3: .......... done [s15amd64-setuptools2-job-07] `-- Extracting python312-3.12.13_3: .......... done [s15amd64-setuptools2-job-07] Extracting py312-future-1.0.0: .......... done ===== Message from openssl-3.0.21,1: -- This port (security/openssl) will update from 3.0 to 3.5 per 2026-07-01 (2026Q3) in anticipation of the End-of-Life of OpenSSL 3.0. A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===== Message from py312-future-1.0.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Outlived it's purpose. It is scheduled to be removed on or after 2026-12-31. ===> py312-mmcif-0.90.0_1 depends on package: py312-future>0 - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on package: py312-msgpack>0 - not found ===> Installing existing package /packages/All/py312-msgpack-1.1.2.pkg [s15amd64-setuptools2-job-07] Installing py312-msgpack-1.1.2... [s15amd64-setuptools2-job-07] Extracting py312-msgpack-1.1.2: .......... done ===> py312-mmcif-0.90.0_1 depends on package: py312-msgpack>0 - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on package: py312-requests>=2.25 - not found ===> Installing existing package /packages/All/py312-requests-2.34.2.pkg [s15amd64-setuptools2-job-07] Installing py312-requests-2.34.2... [s15amd64-setuptools2-job-07] `-- Installing py312-certifi-2026.5.20... [s15amd64-setuptools2-job-07] `-- Extracting py312-certifi-2026.5.20: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-charset-normalizer-3.4.7... [s15amd64-setuptools2-job-07] `-- Extracting py312-charset-normalizer-3.4.7: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-idna-3.18... [s15amd64-setuptools2-job-07] `-- Extracting py312-idna-3.18: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-pysocks-1.7.1_1... [s15amd64-setuptools2-job-07] `-- Extracting py312-pysocks-1.7.1_1: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-urllib3-2.7.0,1... [s15amd64-setuptools2-job-07] `-- Extracting py312-urllib3-2.7.0,1: .......... done [s15amd64-setuptools2-job-07] Extracting py312-requests-2.34.2: .......... done ===== Message from py312-urllib3-2.7.0,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> py312-mmcif-0.90.0_1 depends on package: py312-requests>=2.25 - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on package: py312-six>0 - not found ===> Installing existing package /packages/All/py312-six-1.17.0.pkg [s15amd64-setuptools2-job-07] Installing py312-six-1.17.0... [s15amd64-setuptools2-job-07] Extracting py312-six-1.17.0: .......... done ===> py312-mmcif-0.90.0_1 depends on package: py312-six>0 - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.12_3.pkg [s15amd64-setuptools2-job-07] Installing cmake-core-3.31.12_3... [s15amd64-setuptools2-job-07] `-- Installing jsoncpp-1.9.6_1... [s15amd64-setuptools2-job-07] `-- Extracting jsoncpp-1.9.6_1: .......... done [s15amd64-setuptools2-job-07] `-- Installing libidn2-2.3.8... [s15amd64-setuptools2-job-07] | `-- Installing libunistring-1.4.2... [s15amd64-setuptools2-job-07] | `-- Extracting libunistring-1.4.2: .......... done [s15amd64-setuptools2-job-07] `-- Extracting libidn2-2.3.8: .......... done [s15amd64-setuptools2-job-07] `-- Installing libuv-1.52.1... [s15amd64-setuptools2-job-07] `-- Extracting libuv-1.52.1: .......... done [s15amd64-setuptools2-job-07] `-- Installing rhash-1.4.6... [s15amd64-setuptools2-job-07] `-- Extracting rhash-1.4.6: .......... done [s15amd64-setuptools2-job-07] Extracting cmake-core-3.31.12_3: .......... done ===> py312-mmcif-0.90.0_1 depends on executable: cmake - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on executable: bison - not found ===> Installing existing package /packages/All/bison-3.8.2_2,1.pkg [s15amd64-setuptools2-job-07] Installing bison-3.8.2_2,1... [s15amd64-setuptools2-job-07] `-- Installing libtextstyle-1.0... [s15amd64-setuptools2-job-07] `-- Extracting libtextstyle-1.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing m4-1.4.21,1... [s15amd64-setuptools2-job-07] `-- Extracting m4-1.4.21,1: .......... done [s15amd64-setuptools2-job-07] Extracting bison-3.8.2_2,1: .......... done ===> py312-mmcif-0.90.0_1 depends on executable: bison - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on package: py312-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py312-setuptools-81.0.0.pkg [s15amd64-setuptools2-job-07] Installing py312-setuptools-81.0.0... [s15amd64-setuptools2-job-07] `-- Installing py312-more-itertools-11.1.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-more-itertools-11.1.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-packaging-26.2... [s15amd64-setuptools2-job-07] `-- Extracting py312-packaging-26.2: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-wheel-0.47.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-wheel-0.47.0: .......... done [s15amd64-setuptools2-job-07] Extracting py312-setuptools-81.0.0: .......... done ===> py312-mmcif-0.90.0_1 depends on package: py312-setuptools>=63.1.0 - found ===> Returning to build of py312-mmcif-0.90.0_1 ===> py312-mmcif-0.90.0_1 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py312-mmcif-0.90.0_1 /usr/local/lib/python3.12/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/local/lib/python3.12/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py312-mmcif-0.90.0_1 /usr/local/lib/python3.12/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/local/lib/python3.12/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif copying mmcif/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/Method.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DataCategoryTyped.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DictionaryApi.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/PdbxContainers.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DictionaryInclude.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DataCategoryBase.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DataCategory.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/MethodUtils.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DictMethodRunner.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api copying mmcif/api/DataCategoryFormatted.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core copying mmcif/core/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/PdbxWriter.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/IoAdapterPy.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/PdbxReader.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/BuildDictionaryExec.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/IoAdapterBase.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/CifFile.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/IoAdapterCore.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/BinaryCifReader.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/BinaryCifWriter.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io copying mmcif/io/PdbxExceptions.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 21.1.8 -- The CXX compiler identification is Clang 21.1.8 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:21 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.12 (found version "3.12.13") CMake Warning (dev) at CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/local/lib/libpython3.12.so.1 (found version "3.12.13") -- Python include path set to /usr/local/include/python3.12 CMake Deprecation Warning at modules/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.1 CMake Warning (dev) at modules/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): modules/pybind11/tools/pybind11Tools.cmake:50 (find_package) modules/pybind11/tools/pybind11Common.cmake:180 (include) modules/pybind11/CMakeLists.txt:206 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.12 (found suitable version "3.12.13", minimum required is "3.6") -- Found PythonLibs: /usr/local/lib/libpython3.12.so.1 -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Compiler flags -Wall -Wno-unused-variable -Wno-deprecated-declarations -Wno-register -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto -- ---CMAKE MODULE PATH - -- ---CMAKE SOURCE DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0 -- ---CMAKE PROJECT DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0 -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found BISON: /usr/local/bin/bison (found version "3.8.2") STATUS,---ALL DONE WITH CMAKE -- Configuring done (1.4s) -- Generating done (0.0s) -- Build files have been written to: /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/temp.freebsd-15.1-STABLE-amd64-cpython-312 [ 1%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/ISTable.C.o [ 3%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/RcsbPlatform.C.o [ 4%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/RcsbFile.C.o [ 6%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/BlockIO.C.o [ 8%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/CifString.C.o [ 9%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/ITTable.C.o [ 11%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/Serializer.C.o [ 13%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/GenString.C.o [ 14%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/TTable.C.o [ 16%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/GenCont.C.o [ 18%] Building CXX object CMakeFiles/tables.dir/modules/cpp-tables/src/TableFile.C.o [ 19%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/Exceptions.C.o [ 21%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/DataInfo.C.o [ 21%] Built target tables [ 22%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regcomp.c.o /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:86:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 86 | rcsb_regcomp(preg, pattern, cflags) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:190:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 190 | p_ere(p, stop) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:236:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 236 | p_ere_exp(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:385:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 385 | p_str(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:406:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 406 | p_bre(p, end1, end2) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:439:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 439 | p_simp_re(p, starordinary) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:557:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 557 | p_count(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:580:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 580 | p_bracket(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:654:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 654 | p_b_term(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:720:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 720 | p_b_cclass(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:756:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 756 | p_b_eclass(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:771:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 771 | p_b_symbol(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:791:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 791 | p_b_coll_elem(p, endc) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:820:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 820 | othercase(ch) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:839:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 839 | bothcases(p, ch) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:864:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 864 | ordinary(p, ch) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:886:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 886 | nonnewline(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:910:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 910 | repeat(p, start, from, to) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:982:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 982 | seterr(p, e) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:998:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 998 | allocset(p) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1053:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1053 | freeset(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1078:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1078 | freezeset(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1112:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1112 | firstch(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1131:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1131 | nch(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1151:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1151 | mcadd(p, cs, cp) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1241:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1241 | mcinvert(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1256:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1256 | mccase(p, cs) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1268:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1268 | isinsets(g, c) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1288:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1288 | samesets(g, c1, c2) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1310:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1310 | categorize(p, g) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1338:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1338 | dupl(p, start, finish) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1366:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1366 | doemit(p, op, opnd) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1392:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1392 | doinsert(p, op, opnd, pos) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1432:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1432 | dofwd(p, pos, value) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1450:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1450 | enlarge(p, size) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1473:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1473 | stripsnug(p, g) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1496:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1496 | findmust(p, g) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regcomp.c:1577:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1577 | pluscount(p, g) | ^ 38 warnings generated. [ 24%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regexec.c.o In file included from /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regexec.c:46: /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:66:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 66 | matcher(g, string, nmatch, pmatch, eflags) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:9:17: note: expanded from macro 'matcher' 9 | #define matcher smatcher | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:232:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 232 | dissect(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:12:17: note: expanded from macro 'dissect' 12 | #define dissect sdissect | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:251:17: warning: variable 'dp' set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:420:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 420 | backref(m, start, stop, startst, stopst, lev) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:13:17: note: expanded from macro 'backref' 13 | #define backref sbackref | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:625:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 625 | fast(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:10:14: note: expanded from macro 'fast' 10 | #define fast sfast | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:716:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 716 | slow(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:11:14: note: expanded from macro 'slow' 11 | #define slow sslow | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:812:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 812 | step(g, start, stop, bef, ch, aft) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:14:14: note: expanded from macro 'step' 14 | #define step sstep | ^ In file included from /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regexec.c:95: /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:66:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 66 | matcher(g, string, nmatch, pmatch, eflags) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:20:17: note: expanded from macro 'matcher' 20 | #define matcher lmatcher | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:232:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 232 | dissect(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:23:17: note: expanded from macro 'dissect' 23 | #define dissect ldissect | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:251:17: warning: variable 'dp' set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:420:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 420 | backref(m, start, stop, startst, stopst, lev) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:24:17: note: expanded from macro 'backref' 24 | #define backref lbackref | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:625:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 625 | fast(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:21:14: note: expanded from macro 'fast' 21 | #define fast lfast | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:716:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 716 | slow(m, start, stop, startst, stopst) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:22:14: note: expanded from macro 'slow' 22 | #define slow lslow | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:812:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 812 | step(g, start, stop, bef, ch, aft) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/engine.c:25:14: note: expanded from macro 'step' 25 | #define step lstep | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regexec.c:113:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 113 | rcsb_regexec(preg, string, nmatch, pmatch, eflags) | ^ [ 26%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/mapped_vector.C.o 15 warnings generated. [ 27%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regerror.c.o /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regerror.c:64:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 64 | regerror(errcode, preg, errbuf, errbuf_size) | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regerror.c:112:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 112 | regatoi(preg, localbuf) | ^ 2 warnings generated. [ 29%] Building C object CMakeFiles/regex.dir/modules/cc-regex/src/regfree.c.o /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cc-regex/src/regfree.c:14:1: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 14 | rcsb_regfree(preg) | ^ 1 warning generated. [ 29%] Built target regex [ 31%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifFile.C.o [ 32%] Building CXX object CMakeFiles/common.dir/modules/cpp-common/src/mapped_ptr_vector.C.o [ 32%] Built target common [ 34%] Building CXX object CMakeFiles/cif-file-util.dir/modules/cpp-cif-file-util/src/CifFileUtil.C.o [ 36%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/DicFile.C.o [ 37%] Building CXX object CMakeFiles/cif-file-util.dir/modules/cpp-cif-file-util/src/CifCorrector.C.o [ 39%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/ParentChild.C.o [ 39%] Built target cif-file-util [ 40%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjFileCreator.C.o [ 42%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjFileReader.C.o [ 44%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifParentChild.C.o [ 45%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifDataInfo.C.o [ 47%] Building CXX object CMakeFiles/cif-file.dir/modules/cpp-cif-file/src/CifExcept.C.o [ 47%] Built target cif-file [ 49%] [BISON][bisontarget1] Building parser with bison 3.8.2 [ 50%] [FLEX][flextarget1] Building scanner with flex 2.6.4 [ 52%] [BISON][bisontarget2] Building parser with bison 3.8.2 [ 54%] [FLEX][flextarget2] Building scanner with flex 2.6.4 [ 55%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/CifFileReadDef.C.o [ 57%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/CifScannerBase.C.o [ 59%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjContInfo.C.o [ 60%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/CifParserBase.C.o [ 62%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjCont.C.o /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cpp-cif-parser/src/CifParserBase.C:142:13: warning: variable 'b' set but not used [-Wunused-but-set-variable] 142 | int b = 0; | ^ /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cpp-cif-parser/src/CifParserBase.C:180:13: warning: variable 'b' set but not used [-Wunused-but-set-variable] 180 | int b = 0; | ^ 2 warnings generated. [ 63%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/DICScannerBase.C.o [ 65%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictObjFile.C.o [ 67%] Building CXX object CMakeFiles/cif-parser.dir/modules/cpp-cif-parser/src/DICParserBase.C.o /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/modules/cpp-cif-parser/src/DICParserBase.C:156:13: warning: variable 'b' set but not used [-Wunused-but-set-variable] 156 | int b = 0; | ^ [ 68%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictDataInfo.C.o 1 warning generated. [ 70%] Building C object CMakeFiles/cif-parser.dir/src/CifParser.c.o [ 72%] Building C object CMakeFiles/cif-parser.dir/src/DICParser.c.o [ 73%] Building C object CMakeFiles/cif-parser.dir/src/CifScanner.c.o [ 75%] Building C object CMakeFiles/cif-parser.dir/src/DICScanner.c.o [ 75%] Built target cif-parser [ 77%] Building CXX object CMakeFiles/dict-obj-file.dir/modules/cpp-dict-obj-file/src/DictParentChild.C.o [ 77%] Built target dict-obj-file [ 78%] Linking CXX static library lib/libmmciflib-all.a [ 78%] Built target mmciflib-all [ 81%] Building CXX object CMakeFiles/mmcif_reader_test_1.dir/modules/cpp-mmciflib-test/src/CifReader.C.o [ 81%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifDataInfo.cpp.o [ 83%] Linking CXX executable bin/mmcif_reader_test_1 [ 83%] Built target mmcif_reader_test_1 [ 85%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFile.cpp.o [ 86%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileReadDef.cpp.o [ 88%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileUtil.cpp.o [ 90%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDicFile.cpp.o [ 91%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDictDataInfo.cpp.o [ 93%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapISTable.cpp.o [ 95%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapTableFile.cpp.o [ 96%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapmmciflib.cpp.o [ 98%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wraprcsb_types.cpp.o [100%] Linking CXX shared module /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core/mmciflib.cpython-312.so [100%] Built target mmciflib ------------- setup.py ----------------- Extension source path /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core', '-DPYTHON_EXECUTABLE=/usr/local/bin/python3.12', '-DPYTHON_LIBRARY=/usr/local/lib/libpython3.12.so.1', '-DPYTHON_INCLUDE_DIR=/usr/local/include/python3.12', '-DCMAKE_BUILD_TYPE=Release'] self.build_temp build/temp.freebsd-15.1-STABLE-amd64-cpython-312 extdir /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core ext.name mmcif.core.mmciflib sys.executable /usr/local/bin/python3.12 sys.exec_prefix /usr/local CXXFLAGS -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVERSION_INFO=\"0.90.0\" =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-mmcif-0.90.0_1 depends on package: py312-future>0 - found ===> py312-mmcif-0.90.0_1 depends on package: py312-msgpack>0 - found ===> py312-mmcif-0.90.0_1 depends on package: py312-requests>=2.25 - found ===> py312-mmcif-0.90.0_1 depends on package: py312-six>0 - found ===> py312-mmcif-0.90.0_1 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py312-mmcif-0.90.0_1 ===> Generating temporary packing list /usr/local/lib/python3.12/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/local/lib/python3.12/site-packages/setuptools/_distutils/dist.py:287: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/local/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at CMakeLists.txt:2 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: CMAKE_PROJECT_VERSION CMAKE_PROJECT_VERSION_MAJOR CMAKE_PROJECT_VERSION_MINOR CMAKE_PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:21 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.12 (found version "3.12.13") CMake Warning (dev) at CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Python include path set to /usr/local/include/python3.12 CMake Deprecation Warning at modules/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.1 -- Compiler flags -Wall -Wno-unused-variable -Wno-deprecated-declarations -Wno-register -DBIG_ENDIAN_PLATFORM -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -fno-common -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -flto -- ---CMAKE MODULE PATH - -- ---CMAKE SOURCE DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0 -- ---CMAKE PROJECT DIR - /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0 STATUS,---ALL DONE WITH CMAKE -- Configuring done (0.1s) -- Generating done (0.0s) -- Build files have been written to: /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/temp.freebsd-15.1-STABLE-amd64-cpython-312 [ 6%] Built target tables [ 24%] Built target common [ 31%] Built target regex [ 34%] Built target cif-file-util [ 44%] Built target cif-file [ 65%] Built target cif-parser [ 77%] Built target dict-obj-file [ 78%] Built target mmciflib-all [ 81%] Built target mmcif_reader_test_1 [ 83%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFile.cpp.o [ 85%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifDataInfo.cpp.o [ 88%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileUtil.cpp.o [ 90%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDicFile.cpp.o [ 90%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapCifFileReadDef.cpp.o [ 91%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapDictDataInfo.cpp.o [ 93%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapISTable.cpp.o [ 95%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapTableFile.cpp.o [ 96%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wrapmmciflib.cpp.o [ 98%] Building CXX object CMakeFiles/mmciflib.dir/modules/cpp-core-mmciflib-wrapper-gen/src/wraprcsb_types.cpp.o [100%] Linking CXX shared module /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core/mmciflib.cpython-312.so [100%] Built target mmciflib ------------- setup.py ----------------- Extension source path /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0 CMAKE_ARGS ['-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core', '-DPYTHON_EXECUTABLE=/usr/local/bin/python3.12', '-DPYTHON_LIBRARY=/usr/local/lib/libpython3.12.so.1', '-DPYTHON_INCLUDE_DIR=/usr/local/include/python3.12', '-DCMAKE_BUILD_TYPE=Release'] self.build_temp build/temp.freebsd-15.1-STABLE-amd64-cpython-312 extdir /wrkdirs/usr/ports/science/py-mmcif/work-py312/mmcif-0.90.0/build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core ext.name mmcif.core.mmciflib sys.executable /usr/local/bin/python3.12 sys.exec_prefix /usr/local CXXFLAGS -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DVERSION_INFO=\"0.90.0\" running install_lib creating /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages creating /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif creating /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/Method.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DataCategoryTyped.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DictionaryApi.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/PdbxContainers.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DictionaryInclude.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DataCategoryBase.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DataCategory.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/MethodUtils.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DictMethodRunner.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/api/DataCategoryFormatted.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif creating /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/core copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/core copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/core/mmciflib.cpython-312.so -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/core creating /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/PdbxWriter.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/IoAdapterPy.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/__init__.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/PdbxReader.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/BuildDictionaryExec.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/IoAdapterBase.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/CifFile.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/IoAdapterCore.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/BinaryCifReader.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/BinaryCifWriter.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/mmcif/io/PdbxExceptions.py -> /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/Method.py to Method.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DataCategoryTyped.py to DataCategoryTyped.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DictionaryApi.py to DictionaryApi.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/PdbxContainers.py to PdbxContainers.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DictionaryInclude.py to DictionaryInclude.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DataCategoryBase.py to DataCategoryBase.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DataCategory.py to DataCategory.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/MethodUtils.py to MethodUtils.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DictMethodRunner.py to DictMethodRunner.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/api/DataCategoryFormatted.py to DataCategoryFormatted.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/core/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/PdbxWriter.py to PdbxWriter.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/IoAdapterPy.py to IoAdapterPy.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/PdbxReader.py to PdbxReader.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/BuildDictionaryExec.py to BuildDictionaryExec.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/IoAdapterBase.py to IoAdapterBase.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/CifFile.py to CifFile.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/IoAdapterCore.py to IoAdapterCore.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/BinaryCifReader.py to BinaryCifReader.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/BinaryCifWriter.py to BinaryCifWriter.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif/io/PdbxExceptions.py to PdbxExceptions.cpython-312.pyc writing byte-compilation script '/tmp/tmp5371yyq_.py' /usr/local/bin/python3.12 /tmp/tmp5371yyq_.py removing /tmp/tmp5371yyq_.py running install_egg_info running egg_info writing mmcif.egg-info/PKG-INFO writing dependency_links to mmcif.egg-info/dependency_links.txt writing entry points to mmcif.egg-info/entry_points.txt writing requirements to mmcif.egg-info/requires.txt writing top-level names to mmcif.egg-info/top_level.txt reading manifest file 'mmcif.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'mmcif.egg-info/SOURCES.txt' Copying mmcif.egg-info to /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/lib/python3.12/site-packages/mmcif-0.90.0-py3.12.egg-info running install_scripts Installing build_dict_cli script to /wrkdirs/usr/ports/science/py-mmcif/work-py312/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/science/py-mmcif/work-py312/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/build_dict_cli --> bin/build_dict_cli-3.12 Link: @bin/build_dict_cli --> bin/build_dict_cli-3.12 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-08T02:48:12+0000' 'PKG_NOTE_ports_top_git_hash=18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=1c3394560c4f3b7e3e79480f17b767e3a58bd951' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py312-mmcif-0.90.0_1 ===> Building py312-mmcif-0.90.0_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py312-mmcif-0.90.0_1 build of science/py-mmcif@py312 | py312-mmcif-0.90.0_1 ended at Wed Jul 8 11:56:20 JST 2026 build time: 00:08:24