=>> Building biology/py-ont-fast5-api build started at Wed Jul 8 04:37:42 JST 2026 port directory: /usr/ports/biology/py-ont-fast5-api package name: py312-ont-fast5-api-4.0.2_4 building for: FreeBSD s15amd64-setuptools2-job-05 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1245 Jul 5 18:52 /usr/ports/biology/py-ont-fast5-api/Makefile Ports top last git commit: 18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a Ports top unclean checkout: yes Port dir last git commit: 2bf3834a197ccf8956332378eda8dd7577965246 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 05 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin 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--MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312 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PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py312-ont-fast5-api DOCSDIR=/usr/local/share/doc/py312-ont-fast5-api EXAMPLESDIR=/usr/local/share/examples/py312-ont-fast5-api WWWDIR=/usr/local/www/py312-ont-fast5-api ETCDIR=/usr/local/etc/py312-ont-fast5-api --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MPL20 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ont-fast5-api-4.0.2_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-05] Installing pkg-2.7.5... [s15amd64-setuptools2-job-05] Extracting pkg-2.7.5: .......... done ===> py312-ont-fast5-api-4.0.2_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py312-ont-fast5-api-4.0.2_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MPL20 accepted by the user => nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://codeload.github.com/nanoporetech/ont_fast5_api/tar.gz/release_4.0.2?dummy=/nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz fetch: https://codeload.github.com/nanoporetech/ont_fast5_api/tar.gz/release_4.0.2?dummy=/nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/nanoporetech/ont_fast5_api/tar.gz/release_4.0.2?dummy=/nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz: size of remote file is not known nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz 3986 kB 11 MBps 01s ===> Fetching all distfiles required by py312-ont-fast5-api-4.0.2_4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MPL20 accepted by the user ===> Fetching all distfiles required by py312-ont-fast5-api-4.0.2_4 for building => SHA256 Checksum OK for nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MPL20 accepted by the user ===> Fetching all distfiles required by py312-ont-fast5-api-4.0.2_4 for building ===> Extracting for py312-ont-fast5-api-4.0.2_4 => SHA256 Checksum OK for nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py312-ont-fast5-api-4.0.2_4 ===> Applying FreeBSD patches for py312-ont-fast5-api-4.0.2_4 from /usr/ports/biology/py-ont-fast5-api/files /bin/rm -f /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/ont_fast5_api-release_4.0.2/ont_fast5_api/vbz_plugin/* =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py312-setuptools-81.0.0.pkg [s15amd64-setuptools2-job-05] Installing py312-setuptools-81.0.0... [s15amd64-setuptools2-job-05] `-- Installing py312-more-itertools-11.1.0... [s15amd64-setuptools2-job-05] | `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-05] | | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-05] | | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-05] | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-05] | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-05] | | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-05] | | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-05] | | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-05] | | `-- Installing openssl-3.0.21,1... 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A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-setuptools>=63.1.0 - found ===> Returning to build of py312-ont-fast5-api-4.0.2_4 ===> py312-ont-fast5-api-4.0.2_4 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ont-fast5-api-4.0.2_4 depends on shared library: libvbz_hdf_plugin.so - not found ===> Installing existing package /packages/All/vbz-compression-1.0.13.pkg [s15amd64-setuptools2-job-05] Installing vbz-compression-1.0.13... [s15amd64-setuptools2-job-05] `-- Installing hdf5-1.12.2_2,1... [s15amd64-setuptools2-job-05] | `-- Installing gcc14-14.2.0_6... [s15amd64-setuptools2-job-05] | | `-- Installing binutils-2.44,1... 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[s15amd64-setuptools2-job-05] | `-- Extracting libaec-1.1.7: .......... done [s15amd64-setuptools2-job-05] `-- Extracting hdf5-1.12.2_2,1: .......... done [s15amd64-setuptools2-job-05] Extracting vbz-compression-1.0.13: ..... done ===== Message from gcc14-14.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py312-ont-fast5-api-4.0.2_4 depends on shared library: libvbz_hdf_plugin.so - found (/usr/local/hdf5/lib/plugin/libvbz_hdf_plugin.so) ===> Returning to build of py312-ont-fast5-api-4.0.2_4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py312-ont-fast5-api-4.0.2_4 /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-numpy>=1.16 - not found ===> Installing existing package /packages/All/py312-numpy-2.4.6_1,1.pkg [s15amd64-setuptools2-job-05] Installing py312-numpy-2.4.6_1,1... [s15amd64-setuptools2-job-05] `-- Installing openblas-0.3.33,2... [s15amd64-setuptools2-job-05] `-- Extracting openblas-0.3.33,2: .......... done [s15amd64-setuptools2-job-05] Extracting py312-numpy-2.4.6_1,1: .......... done ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-numpy>=1.16 - found ===> Returning to build of py312-ont-fast5-api-4.0.2_4 ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-h5py>=2.2.0 - not found ===> Installing existing package /packages/All/py312-h5py-3.16.0_1.pkg [s15amd64-setuptools2-job-05] Installing py312-h5py-3.16.0_1... [s15amd64-setuptools2-job-05] Extracting py312-h5py-3.16.0_1: .......... done ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-h5py>=2.2.0 - found ===> Returning to build of py312-ont-fast5-api-4.0.2_4 ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-six>0 - not found ===> Installing existing package /packages/All/py312-six-1.17.0.pkg [s15amd64-setuptools2-job-05] Installing py312-six-1.17.0... [s15amd64-setuptools2-job-05] Extracting py312-six-1.17.0: .......... done ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-six>0 - found ===> Returning to build of py312-ont-fast5-api-4.0.2_4 ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-progressbar>0 - not found ===> Installing existing package /packages/All/py312-progressbar-2.5_1.pkg [s15amd64-setuptools2-job-05] Installing py312-progressbar-2.5_1... [s15amd64-setuptools2-job-05] Extracting py312-progressbar-2.5_1: .......... done ===> py312-ont-fast5-api-4.0.2_4 depends on package: py312-progressbar>0 - found ===> Returning to build of py312-ont-fast5-api-4.0.2_4 ===> py312-ont-fast5-api-4.0.2_4 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py312-ont-fast5-api-4.0.2_4 ===> Generating temporary packing list /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/local/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py creating build/lib/ont_fast5_api copying ont_fast5_api/helpers.py -> build/lib/ont_fast5_api copying ont_fast5_api/multi_fast5.py -> build/lib/ont_fast5_api copying ont_fast5_api/static_data.py -> build/lib/ont_fast5_api copying ont_fast5_api/compression_settings.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_read.py -> build/lib/ont_fast5_api copying ont_fast5_api/__init__.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_info.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_file.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_interface.py -> build/lib/ont_fast5_api copying ont_fast5_api/data_sanitisation.py -> build/lib/ont_fast5_api creating build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/basecall_1d.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/basecall_2d.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/__init__.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/base_tool.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/segmentation.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/event_detection.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/alignment.py -> build/lib/ont_fast5_api/analysis_tools creating build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/demux_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/conversion_utils.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/compress_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/single_to_multi_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/__init__.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/fast5_subset.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/multi_to_single_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/check_file_compression.py -> build/lib/ont_fast5_api/conversion_tools running install_lib creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/helpers.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/multi_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/static_data.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/compression_settings.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_read.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/basecall_1d.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/basecall_2d.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/__init__.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/base_tool.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/segmentation.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/event_detection.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/alignment.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/__init__.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_info.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_file.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_interface.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api creating /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/demux_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/conversion_utils.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/compress_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/single_to_multi_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/__init__.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/fast5_subset.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/multi_to_single_fast5.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/check_file_compression.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/data_sanitisation.py -> /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/helpers.py to helpers.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/multi_fast5.py to multi_fast5.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/static_data.py to static_data.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/compression_settings.py to compression_settings.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/fast5_read.py to fast5_read.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/basecall_1d.py to basecall_1d.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/basecall_2d.py to basecall_2d.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/base_tool.py to base_tool.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/segmentation.py to segmentation.cpython-312.pyc /usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/segmentation.py:92: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/event_detection.py to event_detection.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/alignment.py to alignment.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/fast5_info.py to fast5_info.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/fast5_file.py to fast5_file.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/fast5_interface.py to fast5_interface.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/demux_fast5.py to demux_fast5.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/conversion_utils.py to conversion_utils.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/compress_fast5.py to compress_fast5.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/single_to_multi_fast5.py to single_to_multi_fast5.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/fast5_subset.py to fast5_subset.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/multi_to_single_fast5.py to multi_to_single_fast5.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/conversion_tools/check_file_compression.py to check_file_compression.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api/data_sanitisation.py to data_sanitisation.cpython-312.pyc writing byte-compilation script '/tmp/tmpwsf4ku96.py' /usr/local/bin/python3.12 /tmp/tmpwsf4ku96.py /usr/local/lib/python3.12/site-packages/ont_fast5_api/analysis_tools/segmentation.py:92: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? removing /tmp/tmpwsf4ku96.py running install_egg_info running egg_info creating ont_fast5_api.egg-info writing ont_fast5_api.egg-info/PKG-INFO writing dependency_links to ont_fast5_api.egg-info/dependency_links.txt writing entry points to ont_fast5_api.egg-info/entry_points.txt writing requirements to ont_fast5_api.egg-info/requires.txt writing top-level names to ont_fast5_api.egg-info/top_level.txt writing manifest file 'ont_fast5_api.egg-info/SOURCES.txt' reading manifest file 'ont_fast5_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.md' no previously-included directories found matching 'build' no previously-included directories found matching 'docs' adding license file 'LICENSE.md' writing manifest file 'ont_fast5_api.egg-info/SOURCES.txt' Copying ont_fast5_api.egg-info to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/lib/python3.12/site-packages/ont_fast5_api-4.0.1-py3.12.egg-info running install_scripts Installing check_compression script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/bin Installing compress_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/bin Installing demux_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/bin Installing fast5_subset script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/bin Installing multi_to_single_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/bin Installing single_to_multi_fast5 script to /wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/biology/py-ont-fast5-api/work-py312/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/check_compression --> bin/check_compression-3.12 Link: @bin/check_compression --> bin/check_compression-3.12 Move: bin/compress_fast5 --> bin/compress_fast5-3.12 Link: @bin/compress_fast5 --> bin/compress_fast5-3.12 Move: bin/demux_fast5 --> bin/demux_fast5-3.12 Link: @bin/demux_fast5 --> bin/demux_fast5-3.12 Move: bin/fast5_subset --> bin/fast5_subset-3.12 Link: @bin/fast5_subset --> bin/fast5_subset-3.12 Move: bin/multi_to_single_fast5 --> bin/multi_to_single_fast5-3.12 Link: @bin/multi_to_single_fast5 --> bin/multi_to_single_fast5-3.12 Move: bin/single_to_multi_fast5 --> bin/single_to_multi_fast5-3.12 Link: @bin/single_to_multi_fast5 --> bin/single_to_multi_fast5-3.12 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-07T19:37:42+0000' 'PKG_NOTE_ports_top_git_hash=18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=2bf3834a197ccf8956332378eda8dd7577965246' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py312-ont-fast5-api-4.0.2_4 ===> Building py312-ont-fast5-api-4.0.2_4 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py312-ont-fast5-api-4.0.2_4 build of biology/py-ont-fast5-api@py312 | py312-ont-fast5-api-4.0.2_4 ended at Wed Jul 8 04:39:20 JST 2026 build time: 00:02:01