=>> Building math/py-openTSNE build started at Wed Jul 8 08:30:59 JST 2026 port directory: /usr/ports/math/py-openTSNE package name: py312-openTSNE-1.0.4 building for: FreeBSD s15amd64-setuptools2-job-01 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1090 Jul 5 18:52 /usr/ports/math/py-openTSNE/Makefile Ports top last git commit: 18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a Ports top unclean checkout: yes Port dir last git commit: 075aae10c2ff408652a32a0c9ad87db10db944cb Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=s15amd64-setuptools2 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py312 MAKE_ARGS= FLAVOR=py312 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312/.cache HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-openTSNE/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-openTSNE/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312/.cache HOME=/wrkdirs/usr/ports/math/py-openTSNE/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-openTSNE/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-openTSNE/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/openTSNE" EXAMPLESDIR="share/examples/openTSNE" DATADIR="share/openTSNE" WWWDIR="www/openTSNE" ETCDIR="etc/openTSNE" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openTSNE DOCSDIR=/usr/local/share/doc/openTSNE EXAMPLESDIR=/usr/local/share/examples/openTSNE WWWDIR=/usr/local/www/openTSNE ETCDIR=/usr/local/etc/openTSNE --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-openTSNE-1.0.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-01] Installing pkg-2.7.5... [s15amd64-setuptools2-job-01] Extracting pkg-2.7.5: .......... done ===> py312-openTSNE-1.0.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py312-openTSNE-1.0.4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user => opentsne-1.0.4.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/o/opentsne/opentsne-1.0.4.tar.gz opentsne-1.0.4.tar.gz 246 kB 24 MBps 00s ===> Fetching all distfiles required by py312-openTSNE-1.0.4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py312-openTSNE-1.0.4 for building => SHA256 Checksum OK for opentsne-1.0.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py312-openTSNE-1.0.4 for building ===> Extracting for py312-openTSNE-1.0.4 => SHA256 Checksum OK for opentsne-1.0.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py312-openTSNE-1.0.4 ===> Applying FreeBSD patches for py312-openTSNE-1.0.4 from /usr/ports/math/py-openTSNE/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-openTSNE-1.0.4 depends on package: py312-setuptools>0 - not found ===> Installing existing package /packages/All/py312-setuptools-81.0.0.pkg [s15amd64-setuptools2-job-01] Installing py312-setuptools-81.0.0... [s15amd64-setuptools2-job-01] `-- Installing py312-more-itertools-11.1.0... [s15amd64-setuptools2-job-01] | `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-01] | | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-01] | | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-01] | | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-01] | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-01] | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-01] | | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-01] | | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-01] | | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-01] | | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-01] | | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-01] | | `-- Installing openssl-3.0.21,1... [s15amd64-setuptools2-job-01] | | `-- Extracting openssl-3.0.21,1: .......... done [s15amd64-setuptools2-job-01] | | `-- Installing readline-8.3.3... [s15amd64-setuptools2-job-01] | | `-- Extracting readline-8.3.3: .......... done [s15amd64-setuptools2-job-01] | `-- Extracting python312-3.12.13_3: .......... done [s15amd64-setuptools2-job-01] `-- Extracting py312-more-itertools-11.1.0: .......... done [s15amd64-setuptools2-job-01] `-- Installing py312-packaging-26.2... [s15amd64-setuptools2-job-01] `-- Extracting py312-packaging-26.2: .......... done [s15amd64-setuptools2-job-01] `-- Installing py312-wheel-0.47.0... [s15amd64-setuptools2-job-01] `-- Extracting py312-wheel-0.47.0: .......... done [s15amd64-setuptools2-job-01] Extracting py312-setuptools-81.0.0: .......... done ===== Message from openssl-3.0.21,1: -- This port (security/openssl) will update from 3.0 to 3.5 per 2026-07-01 (2026Q3) in anticipation of the End-of-Life of OpenSSL 3.0. A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===> py312-openTSNE-1.0.4 depends on package: py312-setuptools>0 - found ===> Returning to build of py312-openTSNE-1.0.4 ===> py312-openTSNE-1.0.4 depends on package: py312-numpy>=1.16 - not found ===> Installing existing package /packages/All/py312-numpy-2.4.6_1,1.pkg [s15amd64-setuptools2-job-01] Installing py312-numpy-2.4.6_1,1... [s15amd64-setuptools2-job-01] `-- Installing gcc14-14.2.0_6... [s15amd64-setuptools2-job-01] | `-- Installing binutils-2.44,1... [s15amd64-setuptools2-job-01] | | `-- Installing zstd-1.5.7_2... [s15amd64-setuptools2-job-01] | | `-- Installing liblz4-1.10.0_2,1... [s15amd64-setuptools2-job-01] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [s15amd64-setuptools2-job-01] | | `-- Extracting zstd-1.5.7_2: .......... done [s15amd64-setuptools2-job-01] | `-- Extracting binutils-2.44,1: .......... done [s15amd64-setuptools2-job-01] | `-- Installing gmp-6.3.0... [s15amd64-setuptools2-job-01] | `-- Extracting gmp-6.3.0: .......... done [s15amd64-setuptools2-job-01] | `-- Installing mpc-1.4.1... [s15amd64-setuptools2-job-01] | | `-- Installing mpfr-4.2.2,1... [s15amd64-setuptools2-job-01] | | `-- Extracting mpfr-4.2.2,1: .......... done [s15amd64-setuptools2-job-01] | `-- Extracting mpc-1.4.1: .......... done [s15amd64-setuptools2-job-01] `-- Extracting gcc14-14.2.0_6: .......... done [s15amd64-setuptools2-job-01] `-- Installing openblas-0.3.33,2... [s15amd64-setuptools2-job-01] `-- Extracting openblas-0.3.33,2: .......... done [s15amd64-setuptools2-job-01] Extracting py312-numpy-2.4.6_1,1: .......... done ===== Message from gcc14-14.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py312-openTSNE-1.0.4 depends on package: py312-numpy>=1.16 - found ===> Returning to build of py312-openTSNE-1.0.4 ===> py312-openTSNE-1.0.4 depends on package: py312-wheel>0 - found ===> py312-openTSNE-1.0.4 depends on package: py312-cython>=3.2.4 - not found ===> Installing existing package /packages/All/py312-cython-3.2.4.pkg [s15amd64-setuptools2-job-01] Installing py312-cython-3.2.4... [s15amd64-setuptools2-job-01] Extracting py312-cython-3.2.4: .......... done ===> py312-openTSNE-1.0.4 depends on package: py312-cython>=3.2.4 - found ===> Returning to build of py312-openTSNE-1.0.4 ===> py312-openTSNE-1.0.4 depends on file: /usr/local/bin/python3.12 - found ===> py312-openTSNE-1.0.4 depends on package: py312-build>=0 - not found ===> Installing existing package /packages/All/py312-build-1.5.0.pkg [s15amd64-setuptools2-job-01] Installing py312-build-1.5.0... [s15amd64-setuptools2-job-01] `-- Installing py312-pyproject-hooks-1.2.0... [s15amd64-setuptools2-job-01] `-- Extracting py312-pyproject-hooks-1.2.0: .......... done [s15amd64-setuptools2-job-01] Extracting py312-build-1.5.0: .......... done ===> py312-openTSNE-1.0.4 depends on package: py312-build>=0 - found ===> Returning to build of py312-openTSNE-1.0.4 ===> py312-openTSNE-1.0.4 depends on package: py312-installer>=0 - not found ===> Installing existing package /packages/All/py312-installer-1.0.1.pkg [s15amd64-setuptools2-job-01] Installing py312-installer-1.0.1... [s15amd64-setuptools2-job-01] Extracting py312-installer-1.0.1: .......... done ===> py312-openTSNE-1.0.4 depends on package: py312-installer>=0 - found ===> Returning to build of py312-openTSNE-1.0.4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-openTSNE-1.0.4 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.10_5.pkg [s15amd64-setuptools2-job-01] Installing fftw3-3.3.10_5... [s15amd64-setuptools2-job-01] Extracting fftw3-3.3.10_5: .......... done ===> py312-openTSNE-1.0.4 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of py312-openTSNE-1.0.4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py312-openTSNE-1.0.4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py312-openTSNE-1.0.4 * Getting build dependencies for wheel... /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() FFTW3 header files found. Using FFTW implementation of FFT. running egg_info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE' warning: no files found matching '*.cpp' under directory 'openTSNE' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' * Building wheel... /usr/local/lib/python3.12/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() FFTW3 header files found. Using FFTW implementation of FFT. running bdist_wheel running build running build_py creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/tsne.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/version.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/initialization.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/affinity.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/utils.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/callbacks.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/sklearn.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/nearest_neighbors.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE copying openTSNE/metrics.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul copying openTSNE/_matrix_mul/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies creating build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy running build_ext creating wrkdirs/usr/ports/math/py-openTSNE/work-py312/opentsne-1.0.4/tmpcss182pu cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -c /wrkdirs/usr/ports/math/py-openTSNE/work-py312/opentsne-1.0.4/tmpcss182pu/omp.c -o wrkdirs/usr/ports/math/py-openTSNE/work-py312/opentsne-1.0.4/tmpcss182pu/omp.o cc wrkdirs/usr/ports/math/py-openTSNE/work-py312/opentsne-1.0.4/tmpcss182pu/omp.o -o /wrkdirs/usr/ports/math/py-openTSNE/work-py312/opentsne-1.0.4/tmpcss182pu/omp.c warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' Found openmp. Compiling with openmp flags... Compiling openTSNE/quad_tree.pyx because it changed. [1/1] Cythonizing openTSNE/quad_tree.pyx building 'openTSNE.quad_tree' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c openTSNE/quad_tree.cpp -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/quad_tree.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/quad_tree.cpython-312.so -fopenmp warning: openTSNE/_tsne.pyx:9:7: implicit declaration of 'np' warning: openTSNE/_tsne.pyx:104:0: implicit declaration of 'arg' warning: openTSNE/_tsne.pyx:104:0: implicit declaration of 'dest_sig0' warning: openTSNE/_tsne.pyx:540:8: implicit declaration of 'coord_max' warning: openTSNE/_tsne.pyx:542:8: implicit declaration of 'coord_min' Compiling openTSNE/_tsne.pyx because it changed. [1/1] Cythonizing openTSNE/_tsne.pyx building 'openTSNE._tsne' extension c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c openTSNE/_tsne.cpp -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_tsne.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_tsne.cpython-312.so -fopenmp warning: openTSNE/kl_divergence.pyx:9:7: implicit declaration of 'np' warning: openTSNE/kl_divergence.pyx:17:19: implicit declaration of 'estimate_positive_gradient_nn' Compiling openTSNE/kl_divergence.pyx because it changed. [1/1] Cythonizing openTSNE/kl_divergence.pyx building 'openTSNE.kl_divergence' extension c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c openTSNE/kl_divergence.cpp -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/kl_divergence.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/kl_divergence.cpython-312.so -fopenmp building 'openTSNE.dependencies.annoy.annoylib' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312.so -fopenmp warning: openTSNE/_matrix_mul/matrix_mul_fftw3.pyx:9:7: implicit declaration of 'np' Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed. [1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx building 'openTSNE._matrix_mul.matrix_mul' extension creating build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.12/site-packages/numpy/_core/include -I/usr/local/include/python3.12 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include -pthread -shared -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -isystem /usr/local/include build/temp.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -lfftw3 -o build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312.so -fopenmp installing to build/bdist.freebsd-15.1-STABLE-amd64/wheel running install running install_lib creating build/bdist.freebsd-15.1-STABLE-amd64/wheel creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/tsne.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/version.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/quad_tree.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/openTSNE/_matrix_mul copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE/_matrix_mul copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE/_matrix_mul copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/initialization.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/affinity.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/utils.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/_tsne.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/callbacks.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/sklearn.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/openTSNE/dependencies creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/openTSNE/dependencies/annoy copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE/dependencies/annoy copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE/dependencies/annoy copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/dependencies/__init__.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE/dependencies copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/nearest_neighbors.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/metrics.py -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE copying build/lib.freebsd-15.1-STABLE-amd64-cpython-312/openTSNE/kl_divergence.cpython-312.so -> build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE running install_egg_info running egg_info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' Copying openTSNE.egg-info to build/bdist.freebsd-15.1-STABLE-amd64/wheel/./openTSNE-1.0.4-py3.12.egg-info running install_scripts creating build/bdist.freebsd-15.1-STABLE-amd64/wheel/opentsne-1.0.4.dist-info/WHEEL creating '/wrkdirs/usr/ports/math/py-openTSNE/work-py312/opentsne-1.0.4/dist/.tmp-nos39iv5/opentsne-1.0.4-cp312-cp312-freebsd_15_1_stable_amd64.whl' and adding 'build/bdist.freebsd-15.1-STABLE-amd64/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-312.so' adding 'openTSNE/affinity.py' adding 'openTSNE/callbacks.py' adding 'openTSNE/initialization.py' adding 'openTSNE/kl_divergence.cpython-312.so' adding 'openTSNE/metrics.py' adding 'openTSNE/nearest_neighbors.py' adding 'openTSNE/quad_tree.cpython-312.so' adding 'openTSNE/sklearn.py' adding 'openTSNE/tsne.py' adding 'openTSNE/utils.py' adding 'openTSNE/version.py' adding 'openTSNE/_matrix_mul/__init__.py' adding 'openTSNE/_matrix_mul/matrix_mul.cpython-312.so' adding 'openTSNE/dependencies/__init__.py' adding 'openTSNE/dependencies/annoy/__init__.py' adding 'openTSNE/dependencies/annoy/annoylib.cpython-312.so' adding 'opentsne-1.0.4.dist-info/licenses/LICENSE' adding 'opentsne-1.0.4.dist-info/METADATA' adding 'opentsne-1.0.4.dist-info/WHEEL' adding 'opentsne-1.0.4.dist-info/top_level.txt' adding 'opentsne-1.0.4.dist-info/RECORD' removing build/bdist.freebsd-15.1-STABLE-amd64/wheel Successfully built opentsne-1.0.4-cp312-cp312-freebsd_15_1_stable_amd64.whl =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-openTSNE-1.0.4 depends on package: py312-numpy>=1.16 - found ===> py312-openTSNE-1.0.4 depends on package: py312-scipy>0 - not found ===> Installing existing package /packages/All/py312-scipy-1.17.1_3,1.pkg [s15amd64-setuptools2-job-01] Installing py312-scipy-1.17.1_3,1... [s15amd64-setuptools2-job-01] `-- Installing qhull-8.0.2_3,1... [s15amd64-setuptools2-job-01] `-- Extracting qhull-8.0.2_3,1: .......... done [s15amd64-setuptools2-job-01] Extracting py312-scipy-1.17.1_3,1: .......... done ===> py312-openTSNE-1.0.4 depends on package: py312-scipy>0 - found ===> Returning to build of py312-openTSNE-1.0.4 ===> py312-openTSNE-1.0.4 depends on package: py312-scikit-learn>=0.20 - not found ===> Installing existing package /packages/All/py312-scikit-learn-1.9.0_1.pkg [s15amd64-setuptools2-job-01] Installing py312-scikit-learn-1.9.0_1... [s15amd64-setuptools2-job-01] `-- Installing py312-joblib-1.5.1_1... [s15amd64-setuptools2-job-01] `-- Extracting py312-joblib-1.5.1_1: .......... done [s15amd64-setuptools2-job-01] `-- Installing py312-narwhals-2.21.0... [s15amd64-setuptools2-job-01] `-- Extracting py312-narwhals-2.21.0: .......... done [s15amd64-setuptools2-job-01] `-- Installing py312-threadpoolctl-3.6.0... [s15amd64-setuptools2-job-01] `-- Extracting py312-threadpoolctl-3.6.0: .......... done [s15amd64-setuptools2-job-01] Extracting py312-scikit-learn-1.9.0_1: .......... done ===> py312-openTSNE-1.0.4 depends on package: py312-scikit-learn>=0.20 - found ===> Returning to build of py312-openTSNE-1.0.4 ===> py312-openTSNE-1.0.4 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py312-openTSNE-1.0.4 ===> Generating temporary packing list ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-07T23:30:59+0000' 'PKG_NOTE_ports_top_git_hash=18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=075aae10c2ff408652a32a0c9ad87db10db944cb' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py312-openTSNE-1.0.4 ===> Building py312-openTSNE-1.0.4 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py312-openTSNE-1.0.4 build of math/py-openTSNE@py312 | py312-openTSNE-1.0.4 ended at Wed Jul 8 08:33:38 JST 2026 build time: 00:03:07