=>> Building biology/py-PySCeS build started at Wed Jul 8 11:56:19 JST 2026 port directory: /usr/ports/biology/py-PySCeS package name: py312-pysces-1.2.3 building for: FreeBSD s15amd64-setuptools2-job-08 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1476 Jul 5 18:52 /usr/ports/biology/py-PySCeS/Makefile Ports top last git commit: 18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a Ports top unclean checkout: yes Port dir last git commit: 0327d1191d9320e9eb33ee83219bc2a98f847f76 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 08 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/08/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=s15amd64-setuptools2 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py312 MAKE_ARGS= FLAVOR=py312 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" STRIP="/usr/local/bin/strip" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lpython3.12 -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pysces" EXAMPLESDIR="share/examples/pysces" DATADIR="share/pysces" WWWDIR="www/pysces" ETCDIR="etc/pysces" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pysces DOCSDIR=/usr/local/share/doc/pysces EXAMPLESDIR=/usr/local/share/examples/pysces WWWDIR=/usr/local/www/pysces ETCDIR=/usr/local/etc/pysces --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-pysces-1.2.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-08] Installing pkg-2.7.5... [s15amd64-setuptools2-job-08] Extracting pkg-2.7.5: .......... done ===> py312-pysces-1.2.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py312-pysces-1.2.3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user => pysces-1.2.3.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pysces/pysces-1.2.3.tar.gz pysces-1.2.3.tar.gz 2710 kB 13 MBps 00s ===> Fetching all distfiles required by py312-pysces-1.2.3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py312-pysces-1.2.3 for building => SHA256 Checksum OK for pysces-1.2.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py312-pysces-1.2.3 for building ===> Extracting for py312-pysces-1.2.3 => SHA256 Checksum OK for pysces-1.2.3.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for py312-pysces-1.2.3 ===> Applying FreeBSD patches for py312-pysces-1.2.3 from /usr/ports/biology/py-PySCeS/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py312-pysces-1.2.3 depends on package: py312-meson-python>0 - not found ===> Installing existing package /packages/All/py312-meson-python-0.18.0,1.pkg [s15amd64-setuptools2-job-08] Installing py312-meson-python-0.18.0,1... [s15amd64-setuptools2-job-08] `-- Installing meson-1.10.2_1,1... [s15amd64-setuptools2-job-08] | `-- Installing ninja-1.13.2,4... [s15amd64-setuptools2-job-08] | | `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-08] | | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-08] | | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-08] | | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-08] | | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-08] | | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-08] | | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-08] | | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-08] | | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-08] | | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-08] | | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-08] | | `-- Installing openssl-3.0.21,1... [s15amd64-setuptools2-job-08] | | `-- Extracting openssl-3.0.21,1: .......... done [s15amd64-setuptools2-job-08] | | `-- Installing readline-8.3.3... [s15amd64-setuptools2-job-08] | | `-- Extracting readline-8.3.3: .......... done [s15amd64-setuptools2-job-08] | | `-- Extracting python312-3.12.13_3: .......... done [s15amd64-setuptools2-job-08] | `-- Extracting ninja-1.13.2,4: ........ done [s15amd64-setuptools2-job-08] `-- Extracting meson-1.10.2_1,1: .......... done [s15amd64-setuptools2-job-08] `-- Installing patchelf-0.18.0... [s15amd64-setuptools2-job-08] `-- Extracting patchelf-0.18.0: ....... done [s15amd64-setuptools2-job-08] `-- Installing py312-packaging-26.2... [s15amd64-setuptools2-job-08] `-- Extracting py312-packaging-26.2: .......... done [s15amd64-setuptools2-job-08] `-- Installing py312-pyproject-metadata-0.11.0... [s15amd64-setuptools2-job-08] `-- Extracting py312-pyproject-metadata-0.11.0: .......... done [s15amd64-setuptools2-job-08] Extracting py312-meson-python-0.18.0,1: .......... done ===== Message from openssl-3.0.21,1: -- This port (security/openssl) will update from 3.0 to 3.5 per 2026-07-01 (2026Q3) in anticipation of the End-of-Life of OpenSSL 3.0. A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===> py312-pysces-1.2.3 depends on package: py312-meson-python>0 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on package: py312-numpy>=2.0.0,1 - not found ===> Installing existing package /packages/All/py312-numpy-2.4.6_1,1.pkg [s15amd64-setuptools2-job-08] Installing py312-numpy-2.4.6_1,1... [s15amd64-setuptools2-job-08] `-- Installing gcc14-14.2.0_6... [s15amd64-setuptools2-job-08] | `-- Installing binutils-2.44,1... [s15amd64-setuptools2-job-08] | | `-- Installing zstd-1.5.7_2... [s15amd64-setuptools2-job-08] | | `-- Installing liblz4-1.10.0_2,1... [s15amd64-setuptools2-job-08] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [s15amd64-setuptools2-job-08] | | `-- Extracting zstd-1.5.7_2: .......... done [s15amd64-setuptools2-job-08] | `-- Extracting binutils-2.44,1: .......... done [s15amd64-setuptools2-job-08] | `-- Installing gmp-6.3.0... [s15amd64-setuptools2-job-08] | `-- Extracting gmp-6.3.0: .......... done [s15amd64-setuptools2-job-08] | `-- Installing mpc-1.4.1... [s15amd64-setuptools2-job-08] | | `-- Installing mpfr-4.2.2,1... [s15amd64-setuptools2-job-08] | | `-- Extracting mpfr-4.2.2,1: .......... done [s15amd64-setuptools2-job-08] | `-- Extracting mpc-1.4.1: .......... done [s15amd64-setuptools2-job-08] `-- Extracting gcc14-14.2.0_6: .......... done [s15amd64-setuptools2-job-08] `-- Installing openblas-0.3.33,2... [s15amd64-setuptools2-job-08] `-- Extracting openblas-0.3.33,2: .......... done [s15amd64-setuptools2-job-08] Extracting py312-numpy-2.4.6_1,1: .......... done ===== Message from gcc14-14.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py312-pysces-1.2.3 depends on package: py312-numpy>=2.0.0,1 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on executable: gfortran14 - found ===> py312-pysces-1.2.3 depends on file: /usr/local/bin/python3.12 - found ===> py312-pysces-1.2.3 depends on file: /usr/local/bin/as - found ===> py312-pysces-1.2.3 depends on package: py312-build>=0 - not found ===> Installing existing package /packages/All/py312-build-1.5.0.pkg [s15amd64-setuptools2-job-08] Installing py312-build-1.5.0... [s15amd64-setuptools2-job-08] `-- Installing py312-pyproject-hooks-1.2.0... [s15amd64-setuptools2-job-08] `-- Extracting py312-pyproject-hooks-1.2.0: .......... done [s15amd64-setuptools2-job-08] Extracting py312-build-1.5.0: .......... done ===> py312-pysces-1.2.3 depends on package: py312-build>=0 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on package: py312-installer>=0 - not found ===> Installing existing package /packages/All/py312-installer-1.0.1.pkg [s15amd64-setuptools2-job-08] Installing py312-installer-1.0.1... [s15amd64-setuptools2-job-08] Extracting py312-installer-1.0.1: .......... done ===> py312-pysces-1.2.3 depends on package: py312-installer>=0 - found ===> Returning to build of py312-pysces-1.2.3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for py312-pysces-1.2.3 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for py312-pysces-1.2.3 * Getting build dependencies for wheel... * Building wheel... + meson setup /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3 /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/.mesonpy-tbpma9zo -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/.mesonpy-tbpma9zo/meson-python-native-file.ini The Meson build system Version: 1.10.2 Source dir: /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3 Build dir: /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/.mesonpy-tbpma9zo Build type: native build Project name: pysces Project version: 1.2.3 Fortran compiler for the host machine: gfortran14 (gcc 14.2.0 "GNU Fortran (FreeBSD Ports Collection) 14.2.0") Fortran linker for the host machine: gfortran14 ld.bfd 2.44 C compiler for the host machine: cc (clang 21.1.8 "FreeBSD clang version 21.1.8 (https://github.com/llvm/llvm-project.git llvmorg-21.1.8-0-g2078da43e25a)") C linker for the host machine: cc ld.lld 21.1.8 Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/local/bin/python3.12) Did not find pkg-config by name 'pkg-config' Found pkg-config: NO Run-time dependency python found: YES 3.12 Library quadmath found: YES Build targets in project: 4 pysces 1.2.3 User defined options Native files: /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/.mesonpy-tbpma9zo/meson-python-native-file.ini b_ndebug : if-release b_vscrt : md buildtype : release Found ninja-1.13.2 at /usr/local/bin/ninja + /usr/local/bin/ninja -j4 [1/23] Generating pysces/pitcon/pitconmodule.c with a custom command append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '../pysces/pitcon/pitcon.pyf' (format:free) Post-processing... Block: pitcon1__user__routines Block: pitcon1_user_interface Block: df Block: fx Block: pitcon Block: pitcon1 In: ../pysces/pitcon/pitcon.pyf:pitcon:unknown_interface:pitcon1 get_useparameters: no module pitcon1__user__routines info used by pitcon1 Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Building modules... Constructing call-back function "cb_df_in_pitcon1__user__routines" def df(x,[nvar]): return fjac,ierror Constructing call-back function "cb_fx_in_pitcon1__user__routines" def fx(x,[nvar]): return fvec,ierror Building module "pitcon"... Generating possibly empty wrappers" Maybe empty "pitcon-f2pywrappers.f" Constructing wrapper function "pitcon1"... getarrdims:warning: assumed shape array, using 0 instead of '*' getarrdims:warning: assumed shape array, using 0 instead of '*' ierror,iwork,rwork,xr = pitcon1(df,fpar,fx,ipar,iwork,rwork,xr,[liw,nvar,lrw,imth,df_extra_args,fx_extra_args,overwrite_iwork,overwrite_rwork,overwrite_xr]) Wrote C/API module "pitcon" to file "pysces/pitcon/pitconmodule.c" [2/23] Compiling C object pysces/pitcon/pitcon.cpython-312.so.p/25c7815e9223e8f8d16718245e3dc418013282d0_.._.._f2py_src_fortranobject.c.o [3/23] Generating pysces/nleq2/nleq2module.c with a custom command append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '../pysces/nleq2/nleq2.pyf' (format:free) Post-processing... Block: nleq2__user__routines Block: nleq2_user_interface Block: fcn Block: jac Block: nleq2 Block: nleq2 Block: nleq2 In: ../pysces/nleq2/nleq2.pyf:nleq2:nleq2:nleq2 get_useparameters: no module nleq2__user__routines info used by nleq2 Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Building modules... Constructing call-back function "cb_fcn_in_nleq2__user__routines" def fcn(x,ifail,[n]): return f,ifail Constructing call-back function "cb_jac_in_nleq2__user__routines" def jac(x,[n,m1]): return a Building module "nleq2"... Generating possibly empty wrappers" Maybe empty "nleq2-f2pywrappers.f" Constructing wrapper function "nleq2"... x,xscal,rtol,iopt,ierr = nleq2(fcn,jac,x,xscal,rtol,iopt,iwk,rwk,[n,liwk,lrwk,fcn_extra_args,jac_extra_args]) Wrote C/API module "nleq2" to file "pysces/nleq2/nleq2module.c" [4/23] Scanning target pitcon.cpython-312 for modules [5/23] Generating dynamic dependency information for target pitcon.cpython-312 [6/23] Compiling C object pysces/pitcon/pitcon.cpython-312.so.p/meson-generated_.._pitconmodule.c.o pysces/pitcon/pitconmodule.c:409:9: warning: unused variable 'ierror' [-Wunused-variable] 409 | int ierror=(*ierror_cb_capi); | ^~~~~~ pysces/pitcon/pitconmodule.c:608:9: warning: unused variable 'ierror' [-Wunused-variable] 608 | int ierror=(*ierror_cb_capi); | ^~~~~~ 2 warnings generated. [7/23] Compiling Fortran object pysces/pitcon/pitcon.cpython-312.so.p/meson-generated_.._pitcon-f2pywrappers.f.o [8/23] Scanning target nleq2.cpython-312 for modules [9/23] Generating dynamic dependency information for target nleq2.cpython-312 [10/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/meson-generated_.._nleq2-f2pywrappers.f.o [11/23] Compiling C object pysces/nleq2/nleq2.cpython-312.so.p/25c7815e9223e8f8d16718245e3dc418013282d0_.._.._f2py_src_fortranobject.c.o [12/23] Compiling C object pysces/nleq2/nleq2.cpython-312.so.p/meson-generated_.._nleq2module.c.o pysces/nleq2/nleq2module.c:649:9: warning: unused variable 'ifail' [-Wunused-variable] 649 | int ifail=(*ifail_cb_capi); | ^~~~~ 1 warning generated. [13/23] Compiling Fortran object pysces/pitcon/pitcon.cpython-312.so.p/pcon61subd.f.o ../pysces/pitcon/pcon61subd.f:961:72: 961 | 10 ASSIGN 30 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:966:20: 966 | 20 GO TO NEXT,(30, 50, 70, 110) | 1 Warning: Deleted feature: Assigned GOTO statement at (1) ../pysces/pitcon/pcon61subd.f:968:72: 968 | ASSIGN 50 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:977:72: 977 | ASSIGN 70 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:983:72: 983 | ASSIGN 110 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:1019:72: 1019 | 95 SUM = SUM + DX(J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1) ../pysces/pitcon/pcon61subd.f:996:5: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | 1 Warning: Label 110 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/pcon61subd.f:991:5: 991 | 70 IF( DABS(DX(I)) .GT. CUTLO ) GO TO 75 | 1 Warning: Label 70 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/pcon61subd.f:973:5: 973 | 50 IF( DX(I) .EQ. ZERO) GO TO 200 | 1 Warning: Label 50 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/pcon61subd.f:996:10: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | ^ Warning: 'xmax' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/pcon61subd.f:915:63: 915 | DOUBLE PRECISION DX(1), CUTLO, CUTHI, HITEST, SUM, XMAX,ZERO,ONE | ^ note: 'xmax' was declared here [14/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/zibsec.f.o [15/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/zibconst.f.o [16/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/wnorm.f.o [17/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/linalg_nleq2.f.o ../pysces/nleq2/linalg_nleq2.f:183:32: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | 1 Warning: Unused variable 'd1mach' declared at (1) [-Wunused-variable] ../pysces/nleq2/linalg_nleq2.f:346:9: 346 | IF(LEVEL.EQ.3) THEN | ^ Warning: 'level' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:182:52: 182 | INTEGER I,II,IRANKH,IRK1,I1,J,JD,JJ,K,K1,LEVEL,MH, IDATA | ^ note: 'level' was declared here ../pysces/nleq2/linalg_nleq2.f:245:16: 245 | IF(H.LT.HMAX) JD = 1 | ^ Warning: 'hmax' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:39: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 'hmax' was declared here ../pysces/nleq2/linalg_nleq2.f:272:26: 272 | IF(T.LE.DD .OR. K.GT.IRANKH) THEN | ^ Warning: 'dd' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:25: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 'dd' was declared here ../pysces/nleq2/linalg_nleq2.f:373:15: 373 | IF (S.GT.-ONE) THEN | ^ Warning: 's' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:41: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 's' was declared here ../pysces/nleq2/linalg_nleq2.f:391:33: 391 | IF (IRANKC+1.LE.IRANK .AND. T.NE.ZERO) THEN | ^ Warning: 't' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:46: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 't' was declared here [18/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/zibmon.f.o ../pysces/nleq2/zibmon.f:384:55-69: 384 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) ../pysces/nleq2/zibmon.f:394:55-69: 394 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [19/23] Compiling Fortran object pysces/pitcon/pitcon.cpython-312.so.p/dpcon61w.f.o [20/23] Compiling Fortran object pysces/nleq2/nleq2.cpython-312.so.p/nleq2.f.o ../pysces/nleq2/nleq2.f:1557:72: 1557 | $ ' FCCOR = ', D18.10, ' FC = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] ../pysces/nleq2/nleq2.f:1558:72: 1558 | $ ' DMYCOR = ', D18.10, ' FCNUMP = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] ../pysces/nleq2/nleq2.f:1388:20: 1388 | INTRINSIC DLOG | 1 Warning: Type specified for intrinsic function 'dlog' at (1) is ignored [-Wsurprising] ../pysces/nleq2/nleq2.f:1419:17: 1419 | TOLMIN = DSQRT(TEN*EPMACH) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] ../pysces/nleq2/nleq2.f:1926:24: 1926 | FCH = FC | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] ../pysces/nleq2/nleq2.f:1128:63: 1128 | $QA,A,DXSAVE,DX,DXQ,XA,XWA,F,FA,ETA,XW,FW,DXQA,QU,T1,T2,T3,FC, | 1 Warning: Unused dummy argument 't3' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:3106:51: 3106 | SUBROUTINE N2PRV2(DLEVF,DLEVX,FC,NITER,MPRMON,LUMON,QMIXIO, | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2675:61: 2675 | SUBROUTINE N2LVLS(N,DX1,XW,F,DXQ,CONV,SUMX,DLEVF,MPRMON,QDSCAL) | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2628:64: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'iopt' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2629:26: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'laiwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2629:41: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'larwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2628:39: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2628:42: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2520:39: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2520:42: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2383:52: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'qinisc' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2383:66: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:974:57: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'iwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:974:66: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:974:27: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:1829:72: 1829 | FCMON = DMIN1(FC,FCMON) | ^ Warning: 'fcmon' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/nleq2.f:1390:56: 1390 | $ SUMXA0,SUMXA1,SUMXA2,SUMXTE,FCMON,DLOG | ^ note: 'fcmon' was declared here ../pysces/nleq2/nleq2.f:2210:72: 2210 | APREC = DSQRT(SUMXA/DBLE(FLOAT(N))) | ^ Warning: 'sumxa' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/nleq2.f:1383:58: 1383 | $FCNUMP,FCCOR,FCNMP2,FCNUMK,FCREDU,DLEVFN,SENS1,SUMXA,SUM1,SUM2, | ^ note: 'sumxa' was declared here [21/23] Linking target pysces/nleq2/nleq2.cpython-312.so [22/23] Compiling Fortran object pysces/pitcon/pitcon.cpython-312.so.p/dpcon61.f.o ../pysces/pitcon/dpcon61.f:1782:5: 1782 | 700 CONTINUE | 1 Warning: Label 700 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/dpcon61.f:1566:3: 1566 | 410 CONTINUE | 1 Warning: Label 410 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/dpcon61.f:3671:27: 3671 | * IWORK,JAC,LIW,LOUNIT,NBAND,NEQN,NVAR,X,XTEMP,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] ../pysces/pitcon/dpcon61.f:3126:21: 3126 | * JAC,LIW,LOUNIT,NVAR,X,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] ../pysces/pitcon/dpcon61.f:2533:11: 2533 | 1 .OR.(P.GE.ONEP5*ABS(HALFUB*Q)-ABS(TOLER*Q))) THEN | ^ Warning: 'sdel3' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:2423:28: 2423 | DOUBLE PRECISION SDEL3 | ^ note: 'sdel3' was declared here ../pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxm' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:2994:20: 2994 | INTEGER LFXM | ^ note: 'lfxm' was declared here ../pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:2995:20: 2995 | INTEGER LFXP | ^ note: 'lfxp' was declared here ../pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'ldx' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:3422:19: 3422 | INTEGER LDX | ^ note: 'ldx' was declared here ../pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxm' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:3423:20: 3423 | INTEGER LFXM | ^ note: 'lfxm' was declared here ../pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:3424:20: 3424 | INTEGER LFXP | ^ note: 'lfxp' was declared here [23/23] Linking target pysces/pitcon/pitcon.cpython-312.so [1/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/.mesonpy-tbpma9zo/pysces/nleq2/nleq2.cpython-312.so [2/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/.mesonpy-tbpma9zo/pysces/pitcon/pitcon.cpython-312.so [3/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesConfig.py [4/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesContrib.py [5/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesContribUser.py [6/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesInterfaces.py [7/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesJWSParse.py [8/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesLink.py [9/85] /wrkdirs/usr/ports/biology/py-PySCeS/work-py312/pysces-1.2.3/pysces/PyscesMiniModel.py [10/85] 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[s15amd64-setuptools2-job-08] `-- Extracting qhull-8.0.2_3,1: .......... done [s15amd64-setuptools2-job-08] Extracting py312-matplotlib-3.10.8_2: .......... done ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: gio-modules.ucl Generating GIO modules cache ===== Message from freetype2-2.14.3: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libraqm-0.10.3: -- ===> NOTICE: The libraqm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py312-pysces-1.2.3 depends on package: py312-matplotlib>0 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on package: py312-scipy>0 - not found ===> Installing existing package /packages/All/py312-scipy-1.17.1_3,1.pkg [s15amd64-setuptools2-job-08] Installing py312-scipy-1.17.1_3,1... [s15amd64-setuptools2-job-08] Extracting py312-scipy-1.17.1_3,1: .......... done ===> py312-pysces-1.2.3 depends on package: py312-scipy>0 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on package: py312-numdifftools>0 - not found ===> Installing existing package /packages/All/py312-numdifftools-0.9.42.pkg [s15amd64-setuptools2-job-08] Installing py312-numdifftools-0.9.42... [s15amd64-setuptools2-job-08] Extracting py312-numdifftools-0.9.42: .......... done ===> py312-pysces-1.2.3 depends on package: py312-numdifftools>0 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on package: py312-python-libsbml>0 - not found ===> Installing existing package /packages/All/py312-python-libsbml-5.20.4_1.pkg [s15amd64-setuptools2-job-08] Installing py312-python-libsbml-5.20.4_1... [s15amd64-setuptools2-job-08] Extracting py312-python-libsbml-5.20.4_1: .......... done ===> py312-pysces-1.2.3 depends on package: py312-python-libsbml>0 - found ===> Returning to build of py312-pysces-1.2.3 ===> py312-pysces-1.2.3 depends on executable: gfortran14 - found ===> py312-pysces-1.2.3 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for py312-pysces-1.2.3 ===> Generating temporary packing list /usr/local/lib/python3.12/site-packages/pysces/PyscesJWSParse.py:68: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/pysces/PyscesJWSParse.py:101: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/PyscesJWSParse.py:68: SyntaxWarning: invalid escape sequence '\.' /usr/local/lib/python3.12/site-packages/pysces/PyscesJWSParse.py:101: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:302: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:459: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:670: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:699: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:302: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:459: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:670: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/core2/PyscesCore2Modules.py:699: SyntaxWarning: invalid escape sequence '\*' /usr/local/lib/python3.12/site-packages/pysces/lib/pyparsing.py:1915: SyntaxWarning: invalid escape sequence '\g' /usr/local/lib/python3.12/site-packages/pysces/lib/pyparsing.py:1915: SyntaxWarning: invalid escape sequence '\g' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-08T02:56:19+0000' 'PKG_NOTE_ports_top_git_hash=18628b9022c9c1c0e7cb5e71c2aa1e1e563ca34a' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=0327d1191d9320e9eb33ee83219bc2a98f847f76' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for py312-pysces-1.2.3 ===> Building py312-pysces-1.2.3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py312-pysces-1.2.3 build of biology/py-PySCeS@py312 | py312-pysces-1.2.3 ended at Wed Jul 8 11:58:55 JST 2026 build time: 00:02:58