=>> Building misc/snakemake build started at Sun Jul 12 14:54:23 JST 2026 port directory: /usr/ports/misc/snakemake package name: snakemake-9.20.0 building for: FreeBSD s15amd64-setuptools2-job-07 15.1-STABLE FreeBSD 15.1-STABLE 1501501 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3230 Jul 5 18:52 /usr/ports/misc/snakemake/Makefile Ports top last git commit: 9d0203aad0254f4adb0e81c242ad6ec8717647a5 Ports top unclean checkout: yes Port dir last git commit: 12f571b8a3f8b16c534168f910590b64efa6a9e1 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1501501 Jail OSVERSION: 1501501 Job Id: 07 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501501 UNAME_v=FreeBSD 15.1-STABLE 1501501 UNAME_r=15.1-STABLE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=s15amd64-setuptools2 SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/s15amd64-setuptools2/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/snakemake/work/.cache HOME=/wrkdirs/usr/ports/misc/snakemake/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/snakemake/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/snakemake/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/snakemake/work/.cache HOME=/wrkdirs/usr/ports/misc/snakemake/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/snakemake/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/snakemake/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/snakemake" EXAMPLESDIR="share/examples/snakemake" DATADIR="share/snakemake" WWWDIR="www/snakemake" ETCDIR="etc/snakemake" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/snakemake DOCSDIR=/usr/local/share/doc/snakemake EXAMPLESDIR=/usr/local/share/examples/snakemake WWWDIR=/usr/local/www/snakemake ETCDIR=/usr/local/etc/snakemake --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles OVERLAYS+=/overlays/overlay_setuptools FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### LICENSES_ACCEPTED= EULA ISC MPEG2ENC DEFAULT_VERSIONS+= magick=7 DEFAULT_VERSIONS+= pgsql=18 DEFAULT_VERSIONS+= samba=4.23 DEFAULT_VERSIONS+= ssl=openssl japanese_fcitx5-mozc_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_SET= EDICT2 PERSONALNAME PLACENAME SUDACHIDICT UTDIC japanese_mozc_server_UNSET= JAWIKI x11_wm_hikari_SET= INPUTMETHOD GAMMA LAYERSHELL SCREENCOPY VIRTUALINPUT X11 .if $(.CURDIR:M*/x11-wm/hikari) WITH_DEBUG= YES .endif #### #### DEFAULT_VERSIONS+= ssl=base devel_gamin_set= LIBINOTIFY #### Misc Poudriere #### .include "/etc/make.conf.ports_env" DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (kbytes, -y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MIT accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-9.20.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [s15amd64-setuptools2-job-07] Installing pkg-2.7.5... [s15amd64-setuptools2-job-07] Extracting pkg-2.7.5: .......... done ===> snakemake-9.20.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of snakemake-9.20.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by snakemake-9.20.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by snakemake-9.20.0 for building => SHA256 Checksum OK for snakemake-9.20.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> License MIT accepted by the user ===> Fetching all distfiles required by snakemake-9.20.0 for building ===> Extracting for snakemake-9.20.0 => SHA256 Checksum OK for snakemake-9.20.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for snakemake-9.20.0 ===> Applying FreeBSD patches for snakemake-9.20.0 from /usr/ports/misc/snakemake/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-9.20.0 depends on package: py312-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py312-setuptools-81.0.0.pkg [s15amd64-setuptools2-job-07] Installing py312-setuptools-81.0.0... [s15amd64-setuptools2-job-07] `-- Installing py312-more-itertools-11.1.0... [s15amd64-setuptools2-job-07] | `-- Installing python312-3.12.13_3... [s15amd64-setuptools2-job-07] | | `-- Installing expat-2.8.2... [s15amd64-setuptools2-job-07] | | `-- Extracting expat-2.8.2: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing gettext-runtime-1.0_1... [s15amd64-setuptools2-job-07] | | `-- Installing indexinfo-0.3.1_1... [s15amd64-setuptools2-job-07] | | `-- Extracting indexinfo-0.3.1_1: .... done [s15amd64-setuptools2-job-07] | | `-- Extracting gettext-runtime-1.0_1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing libffi-3.6.0... [s15amd64-setuptools2-job-07] | | `-- Extracting libffi-3.6.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing mpdecimal-4.0.1... [s15amd64-setuptools2-job-07] | | `-- Extracting mpdecimal-4.0.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing openssl-3.0.21,1... [s15amd64-setuptools2-job-07] | | `-- Extracting openssl-3.0.21,1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing readline-8.3.3... [s15amd64-setuptools2-job-07] | | `-- Extracting readline-8.3.3: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting python312-3.12.13_3: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-more-itertools-11.1.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-packaging-26.2... [s15amd64-setuptools2-job-07] `-- Extracting py312-packaging-26.2: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-wheel-0.47.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-wheel-0.47.0: .......... done [s15amd64-setuptools2-job-07] Extracting py312-setuptools-81.0.0: .......... done ===== Message from openssl-3.0.21,1: -- This port (security/openssl) will update from 3.0 to 3.5 per 2026-07-01 (2026Q3) in anticipation of the End-of-Life of OpenSSL 3.0. A new port (security/openssl30) will be created for the remainder of the lifespan of OpenSSL 3.0 and FreeBSD 14. See: https://openssl-library.org/roadmap/index.html ===== Message from python312-3.12.13_3: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py312-gdbm databases/py-gdbm@py312 py312-sqlite3 databases/py-sqlite3@py312 py312-tkinter x11-toolkits/py-tkinter@py312 ===> snakemake-9.20.0 depends on package: py312-setuptools>=63.1.0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for snakemake-9.20.0 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for snakemake-9.20.0 running build running build_py creating build/lib/snakemake copying src/snakemake/api.py -> build/lib/snakemake copying src/snakemake/modules.py -> build/lib/snakemake copying src/snakemake/decorators.py -> build/lib/snakemake copying src/snakemake/workflow.py -> build/lib/snakemake copying src/snakemake/notebook.py -> build/lib/snakemake copying src/snakemake/logging.py -> build/lib/snakemake copying src/snakemake/shell.py -> build/lib/snakemake copying src/snakemake/__main__.py -> build/lib/snakemake copying src/snakemake/__init__.py -> build/lib/snakemake copying src/snakemake/profiles.py -> build/lib/snakemake copying src/snakemake/wrapper.py -> build/lib/snakemake copying src/snakemake/rules.py -> build/lib/snakemake copying src/snakemake/checkpoints.py -> build/lib/snakemake copying src/snakemake/jobs.py -> build/lib/snakemake copying src/snakemake/pathvars.py -> build/lib/snakemake copying src/snakemake/gui.py -> build/lib/snakemake copying src/snakemake/storage.py -> build/lib/snakemake copying src/snakemake/resources.py -> build/lib/snakemake copying src/snakemake/target_jobs.py -> build/lib/snakemake copying src/snakemake/benchmark.py -> build/lib/snakemake copying src/snakemake/cli.py -> build/lib/snakemake copying src/snakemake/iocontainers.py -> build/lib/snakemake copying src/snakemake/path_modifier.py -> build/lib/snakemake copying src/snakemake/spawn_jobs.py -> build/lib/snakemake copying src/snakemake/parser.py -> build/lib/snakemake copying src/snakemake/ruleinfo.py -> build/lib/snakemake copying src/snakemake/utils.py -> build/lib/snakemake copying src/snakemake/dag.py -> build/lib/snakemake copying src/snakemake/exceptions.py -> build/lib/snakemake copying src/snakemake/cwl.py -> build/lib/snakemake copying src/snakemake/output_index.py -> build/lib/snakemake copying src/snakemake/ioflags.py -> build/lib/snakemake copying src/snakemake/sourcecache.py -> build/lib/snakemake creating build/lib/snakemake/common copying src/snakemake/common/argparse.py -> build/lib/snakemake/common copying src/snakemake/common/prefix_lookup.py -> build/lib/snakemake/common copying src/snakemake/common/configfile.py -> build/lib/snakemake/common copying src/snakemake/common/__init__.py -> build/lib/snakemake/common copying src/snakemake/common/typing.py -> build/lib/snakemake/common copying src/snakemake/common/tbdstring.py -> build/lib/snakemake/common copying src/snakemake/common/workdir_handler.py -> build/lib/snakemake/common copying src/snakemake/common/git.py -> build/lib/snakemake/common creating build/lib/snakemake/report copying src/snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying src/snakemake/report/common.py -> build/lib/snakemake/report copying src/snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/settings copying src/snakemake/settings/types.py -> build/lib/snakemake/settings copying src/snakemake/settings/__init__.py -> build/lib/snakemake/settings copying src/snakemake/settings/enums.py -> build/lib/snakemake/settings creating build/lib/snakemake/ioutils copying src/snakemake/ioutils/__init__.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/subpath.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/rule_items_proxy.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/evaluate.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/lookup.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/as_py_module.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/exists.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/branch.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/collect.py -> build/lib/snakemake/ioutils copying src/snakemake/ioutils/input.py -> build/lib/snakemake/ioutils creating build/lib/snakemake/template_rendering copying src/snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering copying src/snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying src/snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/deployment copying src/snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying src/snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying src/snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying src/snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying src/snakemake/deployment/conda.py -> build/lib/snakemake/deployment creating build/lib/snakemake/scheduling copying src/snakemake/scheduling/job_scheduler.py -> build/lib/snakemake/scheduling copying src/snakemake/scheduling/__init__.py -> build/lib/snakemake/scheduling copying src/snakemake/scheduling/milp.py -> build/lib/snakemake/scheduling copying src/snakemake/scheduling/greedy.py -> build/lib/snakemake/scheduling creating build/lib/snakemake/persistence copying src/snakemake/persistence/db.py -> build/lib/snakemake/persistence copying src/snakemake/persistence/__init__.py -> build/lib/snakemake/persistence copying src/snakemake/persistence/file.py -> build/lib/snakemake/persistence creating build/lib/snakemake/remote copying src/snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying src/snakemake/remote/S3.py -> build/lib/snakemake/remote copying src/snakemake/remote/GS.py -> build/lib/snakemake/remote copying src/snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying src/snakemake/remote/__init__.py -> build/lib/snakemake/remote copying src/snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying src/snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying src/snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying src/snakemake/remote/FTP.py -> build/lib/snakemake/remote copying src/snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying src/snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying src/snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying src/snakemake/remote/EGA.py -> build/lib/snakemake/remote copying src/snakemake/remote/webdav.py -> build/lib/snakemake/remote copying src/snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying src/snakemake/remote/gfal.py -> build/lib/snakemake/remote copying src/snakemake/remote/iRODS.py -> build/lib/snakemake/remote creating build/lib/snakemake/io copying src/snakemake/io/fmt.py -> build/lib/snakemake/io copying src/snakemake/io/__init__.py -> build/lib/snakemake/io creating build/lib/snakemake/executors copying src/snakemake/executors/touch.py -> build/lib/snakemake/executors copying src/snakemake/executors/dryrun.py -> build/lib/snakemake/executors copying src/snakemake/executors/__init__.py -> build/lib/snakemake/executors copying src/snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying src/snakemake/executors/local.py -> build/lib/snakemake/executors creating build/lib/snakemake/assets copying src/snakemake/assets/__init__.py -> build/lib/snakemake/assets creating build/lib/snakemake/linting copying src/snakemake/linting/__init__.py -> build/lib/snakemake/linting copying src/snakemake/linting/rules.py -> build/lib/snakemake/linting copying src/snakemake/linting/links.py -> build/lib/snakemake/linting copying src/snakemake/linting/snakefiles.py -> build/lib/snakemake/linting creating build/lib/snakemake/caching copying src/snakemake/caching/__init__.py -> build/lib/snakemake/caching copying src/snakemake/caching/rule.py -> build/lib/snakemake/caching copying src/snakemake/caching/local.py -> build/lib/snakemake/caching copying src/snakemake/caching/storage.py -> build/lib/snakemake/caching copying src/snakemake/caching/hash.py -> build/lib/snakemake/caching creating build/lib/snakemake/script copying src/snakemake/script/__init__.py -> build/lib/snakemake/script creating build/lib/snakemake/unit_tests copying src/snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/common/tests copying src/snakemake/common/tests/__init__.py -> build/lib/snakemake/common/tests creating build/lib/snakemake/common/tests/testcases copying src/snakemake/common/tests/testcases/__init__.py -> build/lib/snakemake/common/tests/testcases creating build/lib/snakemake/common/tests/testcases/simple copying src/snakemake/common/tests/testcases/simple/__init__.py -> build/lib/snakemake/common/tests/testcases/simple creating build/lib/snakemake/common/tests/testcases/groups copying src/snakemake/common/tests/testcases/groups/__init__.py -> build/lib/snakemake/common/tests/testcases/groups creating build/lib/snakemake/report/html_reporter copying src/snakemake/report/html_reporter/common.py -> build/lib/snakemake/report/html_reporter copying src/snakemake/report/html_reporter/__init__.py -> build/lib/snakemake/report/html_reporter creating build/lib/snakemake/report/html_reporter/template copying src/snakemake/report/html_reporter/template/__init__.py -> build/lib/snakemake/report/html_reporter/template creating build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/metadata.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/runtimes.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/common.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/__init__.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/packages.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/rules.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/results.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/timeline.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/configfiles.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/categories.py -> build/lib/snakemake/report/html_reporter/data copying src/snakemake/report/html_reporter/data/rulegraph.py -> build/lib/snakemake/report/html_reporter/data creating build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/__init__.py -> build/lib/snakemake/report/html_reporter/template/components creating build/lib/snakemake/io/flags copying src/snakemake/io/flags/__init__.py -> build/lib/snakemake/io/flags copying src/snakemake/io/flags/access_patterns.py -> build/lib/snakemake/io/flags creating build/lib/snakemake/unit_tests/templates copying src/snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates running egg_info writing src/snakemake.egg-info/PKG-INFO writing dependency_links to src/snakemake.egg-info/dependency_links.txt writing entry points to src/snakemake.egg-info/entry_points.txt writing requirements to src/snakemake.egg-info/requires.txt writing top-level names to src/snakemake.egg-info/top_level.txt reading manifest file 'src/snakemake.egg-info/SOURCES.txt' adding license file 'LICENSE.md' writing manifest file 'src/snakemake.egg-info/SOURCES.txt' copying src/snakemake/gui.html -> build/lib/snakemake copying src/snakemake/report.css -> build/lib/snakemake creating build/lib/snakemake/assets/data/vega-tooltip copying src/snakemake/assets/data/vega-tooltip/LICENSE -> build/lib/snakemake/assets/data/vega-tooltip creating build/lib/snakemake/assets/data/vega copying src/snakemake/assets/data/vega/LICENSE -> build/lib/snakemake/assets/data/vega copying src/snakemake/assets/data/vega/vega.js -> build/lib/snakemake/assets/data/vega creating build/lib/snakemake/assets/data/d3-shape copying src/snakemake/assets/data/d3-shape/LICENSE -> build/lib/snakemake/assets/data/d3-shape creating build/lib/snakemake/assets/data/vega-schema-url-parser copying src/snakemake/assets/data/vega-schema-url-parser/LICENSE -> build/lib/snakemake/assets/data/vega-schema-url-parser creating build/lib/snakemake/assets/data/d3-geo copying src/snakemake/assets/data/d3-geo/LICENSE -> build/lib/snakemake/assets/data/d3-geo creating build/lib/snakemake/assets/data/d3-contour copying src/snakemake/assets/data/d3-contour/LICENSE -> build/lib/snakemake/assets/data/d3-contour creating build/lib/snakemake/assets/data/d3-hierarchy copying src/snakemake/assets/data/d3-hierarchy/LICENSE -> build/lib/snakemake/assets/data/d3-hierarchy creating build/lib/snakemake/assets/data/array-flat-polyfill copying src/snakemake/assets/data/array-flat-polyfill/LICENSE -> build/lib/snakemake/assets/data/array-flat-polyfill creating build/lib/snakemake/assets/data/d3-interpolate copying src/snakemake/assets/data/d3-interpolate/LICENSE -> build/lib/snakemake/assets/data/d3-interpolate creating build/lib/snakemake/assets/data/d3-path copying src/snakemake/assets/data/d3-path/LICENSE -> build/lib/snakemake/assets/data/d3-path creating build/lib/snakemake/assets/data/d3-color copying src/snakemake/assets/data/d3-color/LICENSE -> build/lib/snakemake/assets/data/d3-color creating build/lib/snakemake/assets/data/json-stringify-pretty-compact copying src/snakemake/assets/data/json-stringify-pretty-compact/LICENSE -> build/lib/snakemake/assets/data/json-stringify-pretty-compact creating build/lib/snakemake/assets/data/commons-math copying src/snakemake/assets/data/commons-math/LICENSE.txt -> build/lib/snakemake/assets/data/commons-math copying src/snakemake/assets/data/commons-math/NOTICE.txt -> build/lib/snakemake/assets/data/commons-math creating build/lib/snakemake/assets/data/@types-estree copying src/snakemake/assets/data/@types-estree/LICENSE -> build/lib/snakemake/assets/data/@types-estree creating build/lib/snakemake/assets/data/fast-json-stable-stringify copying src/snakemake/assets/data/fast-json-stable-stringify/LICENSE -> build/lib/snakemake/assets/data/fast-json-stable-stringify creating build/lib/snakemake/assets/data/d3-dsv copying src/snakemake/assets/data/d3-dsv/LICENSE -> build/lib/snakemake/assets/data/d3-dsv creating build/lib/snakemake/assets/data/d3-format copying src/snakemake/assets/data/d3-format/LICENSE -> build/lib/snakemake/assets/data/d3-format creating build/lib/snakemake/assets/data/tailwindcss copying src/snakemake/assets/data/tailwindcss/LICENSE -> build/lib/snakemake/assets/data/tailwindcss copying src/snakemake/assets/data/tailwindcss/tailwind.css -> build/lib/snakemake/assets/data/tailwindcss creating build/lib/snakemake/assets/data/shapefile copying src/snakemake/assets/data/shapefile/LICENSE -> build/lib/snakemake/assets/data/shapefile creating build/lib/snakemake/assets/data/pygments copying src/snakemake/assets/data/pygments/LICENSE -> build/lib/snakemake/assets/data/pygments creating build/lib/snakemake/assets/data/d3-regression copying src/snakemake/assets/data/d3-regression/LICENSE -> build/lib/snakemake/assets/data/d3-regression creating build/lib/snakemake/assets/data/regression copying src/snakemake/assets/data/regression/LICENSE -> build/lib/snakemake/assets/data/regression creating build/lib/snakemake/assets/data/@types-clone copying src/snakemake/assets/data/@types-clone/LICENSE -> build/lib/snakemake/assets/data/@types-clone creating build/lib/snakemake/assets/data/d3-geo-projection copying src/snakemake/assets/data/d3-geo-projection/LICENSE -> build/lib/snakemake/assets/data/d3-geo-projection creating build/lib/snakemake/assets/data/heroicons copying src/snakemake/assets/data/heroicons/LICENSE -> build/lib/snakemake/assets/data/heroicons creating build/lib/snakemake/assets/data/snakemake copying src/snakemake/assets/data/snakemake/LICENSE.md -> build/lib/snakemake/assets/data/snakemake creating build/lib/snakemake/assets/data/d3-quadtree copying src/snakemake/assets/data/d3-quadtree/LICENSE -> build/lib/snakemake/assets/data/d3-quadtree creating build/lib/snakemake/assets/data/d3-timer copying src/snakemake/assets/data/d3-timer/LICENSE -> build/lib/snakemake/assets/data/d3-timer creating build/lib/snakemake/assets/data/fabric copying src/snakemake/assets/data/fabric/LICENSE -> build/lib/snakemake/assets/data/fabric creating build/lib/snakemake/assets/data/topojson-client copying src/snakemake/assets/data/topojson-client/LICENSE -> build/lib/snakemake/assets/data/topojson-client creating build/lib/snakemake/assets/data/science copying src/snakemake/assets/data/science/LICENSE -> build/lib/snakemake/assets/data/science creating build/lib/snakemake/assets/data/esprima copying src/snakemake/assets/data/esprima/LICENSE.BSD -> build/lib/snakemake/assets/data/esprima creating build/lib/snakemake/assets/data/d3-scale copying src/snakemake/assets/data/d3-scale/LICENSE -> build/lib/snakemake/assets/data/d3-scale creating build/lib/snakemake/assets/data/d3-time-format copying src/snakemake/assets/data/d3-time-format/LICENSE -> build/lib/snakemake/assets/data/d3-time-format creating build/lib/snakemake/assets/data/fast-json-patch copying src/snakemake/assets/data/fast-json-patch/LICENSE -> build/lib/snakemake/assets/data/fast-json-patch creating build/lib/snakemake/assets/data/delaunator copying src/snakemake/assets/data/delaunator/LICENSE -> build/lib/snakemake/assets/data/delaunator creating build/lib/snakemake/assets/data/d3-dispatch copying src/snakemake/assets/data/d3-dispatch/LICENSE -> build/lib/snakemake/assets/data/d3-dispatch creating build/lib/snakemake/assets/data/vega-lite copying src/snakemake/assets/data/vega-lite/vega-lite.js -> build/lib/snakemake/assets/data/vega-lite copying src/snakemake/assets/data/vega-lite/LICENSE -> build/lib/snakemake/assets/data/vega-lite creating build/lib/snakemake/assets/data/quickselect copying src/snakemake/assets/data/quickselect/LICENSE -> build/lib/snakemake/assets/data/quickselect creating build/lib/snakemake/assets/data/d3-time copying src/snakemake/assets/data/d3-time/LICENSE -> build/lib/snakemake/assets/data/d3-time creating build/lib/snakemake/assets/data/vega-themes copying src/snakemake/assets/data/vega-themes/LICENSE -> build/lib/snakemake/assets/data/vega-themes creating build/lib/snakemake/assets/data/d3-force copying src/snakemake/assets/data/d3-force/LICENSE -> build/lib/snakemake/assets/data/d3-force creating build/lib/snakemake/assets/data/fast-deep-equal copying src/snakemake/assets/data/fast-deep-equal/LICENSE -> build/lib/snakemake/assets/data/fast-deep-equal creating build/lib/snakemake/assets/data/semver copying src/snakemake/assets/data/semver/LICENSE -> build/lib/snakemake/assets/data/semver creating build/lib/snakemake/assets/data/d3-delaunay copying src/snakemake/assets/data/d3-delaunay/LICENSE -> build/lib/snakemake/assets/data/d3-delaunay creating build/lib/snakemake/assets/data/prop-types copying src/snakemake/assets/data/prop-types/LICENSE -> build/lib/snakemake/assets/data/prop-types copying src/snakemake/assets/data/prop-types/prop-types.min.js -> build/lib/snakemake/assets/data/prop-types creating build/lib/snakemake/assets/data/react copying src/snakemake/assets/data/react/react.production.min.js -> build/lib/snakemake/assets/data/react copying src/snakemake/assets/data/react/react-dom.production.min.js -> build/lib/snakemake/assets/data/react copying src/snakemake/assets/data/react/LICENSE -> build/lib/snakemake/assets/data/react creating build/lib/snakemake/assets/data/hashlru copying src/snakemake/assets/data/hashlru/LICENSE -> build/lib/snakemake/assets/data/hashlru creating build/lib/snakemake/assets/data/vega-embed copying src/snakemake/assets/data/vega-embed/LICENSE -> build/lib/snakemake/assets/data/vega-embed copying src/snakemake/assets/data/vega-embed/vega-embed.js -> build/lib/snakemake/assets/data/vega-embed creating build/lib/snakemake/assets/data/clone copying src/snakemake/assets/data/clone/LICENSE -> build/lib/snakemake/assets/data/clone creating build/lib/snakemake/assets/data/d3-array copying src/snakemake/assets/data/d3-array/LICENSE -> build/lib/snakemake/assets/data/d3-array copying src/snakemake/report/html_reporter/template/logo.svg -> build/lib/snakemake/report/html_reporter/template copying src/snakemake/report/html_reporter/template/index.html.jinja2 -> build/lib/snakemake/report/html_reporter/template copying src/snakemake/report/html_reporter/template/style.css -> build/lib/snakemake/report/html_reporter/template copying src/snakemake/report/html_reporter/template/components/icon.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/toggle.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/search_results.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/common.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/subcategory.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/rule_graph.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/list_heading.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/list_item.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/abstract_results.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/metadata.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/report_info.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/result_info.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/content.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/abstract_menu.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/category.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/rule_info.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/breadcrumbs.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/button.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/result_view_button.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/navbar.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/app.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/abstract_view_manager.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/stats.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/report/html_reporter/template/components/menu.js -> build/lib/snakemake/report/html_reporter/template/components copying src/snakemake/common/tests/testcases/simple/Snakefile -> build/lib/snakemake/common/tests/testcases/simple copying src/snakemake/common/tests/testcases/simple/caption.rst -> build/lib/snakemake/common/tests/testcases/simple copying src/snakemake/common/tests/testcases/groups/Snakefile -> build/lib/snakemake/common/tests/testcases/groups copying src/snakemake/common/tests/testcases/groups/caption.rst -> build/lib/snakemake/common/tests/testcases/groups copying src/snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying src/snakemake/unit_tests/templates/conftest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying src/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying src/snakemake/executors/jobscript.sh -> build/lib/snakemake/executors =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-9.20.0 depends on package: py312-conda-inject>=1.3.1 - not found ===> Installing existing package /packages/All/py312-conda-inject-1.3.2.pkg [s15amd64-setuptools2-job-07] Installing py312-conda-inject-1.3.2... [s15amd64-setuptools2-job-07] `-- Installing py312-pyyaml-6.0.3... [s15amd64-setuptools2-job-07] | `-- Installing libyaml-0.2.5... [s15amd64-setuptools2-job-07] | `-- Extracting libyaml-0.2.5: ......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-pyyaml-6.0.3: .......... done [s15amd64-setuptools2-job-07] Extracting py312-conda-inject-1.3.2: .......... done ===> snakemake-9.20.0 depends on package: py312-conda-inject>=1.3.1 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-configargparse>0 - not found ===> Installing existing package /packages/All/py312-configargparse-1.7.5.pkg [s15amd64-setuptools2-job-07] Installing py312-configargparse-1.7.5... [s15amd64-setuptools2-job-07] Extracting py312-configargparse-1.7.5: .......... done ===> snakemake-9.20.0 depends on package: py312-configargparse>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-connection_pool>=0.0.3 - not found ===> Installing existing package /packages/All/py312-connection_pool-0.0.3_1.pkg [s15amd64-setuptools2-job-07] Installing py312-connection_pool-0.0.3_1... [s15amd64-setuptools2-job-07] Extracting py312-connection_pool-0.0.3_1: .......... done ===> snakemake-9.20.0 depends on package: py312-connection_pool>=0.0.3 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-docutils>0 - not found ===> Installing existing package /packages/All/py312-docutils-0.21.2,1.pkg [s15amd64-setuptools2-job-07] Installing py312-docutils-0.21.2,1... [s15amd64-setuptools2-job-07] Extracting py312-docutils-0.21.2,1: .......... done ===> snakemake-9.20.0 depends on package: py312-docutils>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-dpath>=2.1.6 - not found ===> Installing existing package /packages/All/py312-dpath-2.2.0.pkg [s15amd64-setuptools2-job-07] Installing py312-dpath-2.2.0... [s15amd64-setuptools2-job-07] Extracting py312-dpath-2.2.0: .......... done ===> snakemake-9.20.0 depends on package: py312-dpath>=2.1.6 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-gitpython>0 - not found ===> Installing existing package /packages/All/py312-gitpython-3.1.50.pkg [s15amd64-setuptools2-job-07] Installing py312-gitpython-3.1.50... [s15amd64-setuptools2-job-07] `-- Installing py312-gitdb-4.0.12... [s15amd64-setuptools2-job-07] | `-- Installing py312-smmap-5.0.3... [s15amd64-setuptools2-job-07] | `-- Extracting py312-smmap-5.0.3: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-gitdb-4.0.12: .......... done [s15amd64-setuptools2-job-07] Extracting py312-gitpython-3.1.50: .......... done ===> snakemake-9.20.0 depends on package: py312-gitpython>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-humanfriendly>0 - not found ===> Installing existing package /packages/All/py312-humanfriendly-10.0_1.pkg [s15amd64-setuptools2-job-07] Installing py312-humanfriendly-10.0_1... [s15amd64-setuptools2-job-07] Extracting py312-humanfriendly-10.0_1: .......... done ===> snakemake-9.20.0 depends on package: py312-humanfriendly>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-immutables>0 - not found ===> Installing existing package /packages/All/py312-immutables-0.21.pkg [s15amd64-setuptools2-job-07] Installing py312-immutables-0.21... [s15amd64-setuptools2-job-07] Extracting py312-immutables-0.21: .......... done ===> snakemake-9.20.0 depends on package: py312-immutables>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-Jinja2>=3.0 - not found ===> Installing existing package /packages/All/py312-Jinja2-3.1.6.pkg [s15amd64-setuptools2-job-07] Installing py312-Jinja2-3.1.6... [s15amd64-setuptools2-job-07] `-- Installing py312-Babel-2.18.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-Babel-2.18.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-markupsafe-3.0.3... [s15amd64-setuptools2-job-07] `-- Extracting py312-markupsafe-3.0.3: .......... done [s15amd64-setuptools2-job-07] Extracting py312-Jinja2-3.1.6: .......... done ===> snakemake-9.20.0 depends on package: py312-Jinja2>=3.0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-jsonschema>0 - not found ===> Installing existing package /packages/All/py312-jsonschema-4.26.0.pkg [s15amd64-setuptools2-job-07] Installing py312-jsonschema-4.26.0... [s15amd64-setuptools2-job-07] `-- Installing py312-attrs-26.1.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-attrs-26.1.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-jsonschema-specifications-2025.9.1... [s15amd64-setuptools2-job-07] | `-- Installing py312-referencing-0.37.0... [s15amd64-setuptools2-job-07] | | `-- Installing py312-rpds-py-0.30.0_5... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-rpds-py-0.30.0_5: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-typing-extensions-4.15.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-typing-extensions-4.15.0: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-referencing-0.37.0: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-jsonschema-specifications-2025.9.1: .......... done [s15amd64-setuptools2-job-07] Extracting py312-jsonschema-4.26.0: .......... done ===> snakemake-9.20.0 depends on package: py312-jsonschema>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-nbformat>0 - not found ===> Installing existing package /packages/All/py312-nbformat-5.10.4.pkg [s15amd64-setuptools2-job-07] Installing py312-nbformat-5.10.4... [s15amd64-setuptools2-job-07] `-- Installing py312-fastjsonschema-2.21.2... [s15amd64-setuptools2-job-07] `-- Extracting py312-fastjsonschema-2.21.2: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-jupyter-core-5.9.1... [s15amd64-setuptools2-job-07] | `-- Installing py312-platformdirs-4.10.0... [s15amd64-setuptools2-job-07] | `-- Extracting py312-platformdirs-4.10.0: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-traitlets-5.14.3... [s15amd64-setuptools2-job-07] | `-- Extracting py312-traitlets-5.14.3: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-jupyter-core-5.9.1: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-sqlite3-3.12.13_10... [s15amd64-setuptools2-job-07] | `-- Installing sqlite3-3.53.3,1... [s15amd64-setuptools2-job-07] | | `-- Installing libedit-3.1.20260512,1... [s15amd64-setuptools2-job-07] | | `-- Extracting libedit-3.1.20260512,1: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting sqlite3-3.53.3,1: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-sqlite3-3.12.13_10: ......... done [s15amd64-setuptools2-job-07] Extracting py312-nbformat-5.10.4: .......... done ===> snakemake-9.20.0 depends on package: py312-nbformat>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-packaging>=24.0 - found ===> snakemake-9.20.0 depends on package: py312-psutil>0 - not found ===> Installing existing package /packages/All/py312-psutil-7.2.2_1.pkg [s15amd64-setuptools2-job-07] Installing py312-psutil-7.2.2_1... [s15amd64-setuptools2-job-07] Extracting py312-psutil-7.2.2_1: .......... done ===> snakemake-9.20.0 depends on package: py312-psutil>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-PuLP>=2.3.1 - not found ===> Installing existing package /packages/All/py312-PuLP-3.3.2.pkg [s15amd64-setuptools2-job-07] Installing py312-PuLP-3.3.2... [s15amd64-setuptools2-job-07] `-- Installing coin-or-cbc-2.10.13_1... [s15amd64-setuptools2-job-07] | `-- Installing coin-or-Clp-1.17.11... [s15amd64-setuptools2-job-07] | | `-- Installing blas-3.12.1... [s15amd64-setuptools2-job-07] | | `-- Installing gcc14-14.2.0_6... [s15amd64-setuptools2-job-07] | | | `-- Installing binutils-2.44,1... [s15amd64-setuptools2-job-07] | | | `-- Installing zstd-1.5.7_2... [s15amd64-setuptools2-job-07] | | | | `-- Installing liblz4-1.10.0_2,1... [s15amd64-setuptools2-job-07] | | | | `-- Extracting liblz4-1.10.0_2,1: .......... done [s15amd64-setuptools2-job-07] | | | `-- Extracting zstd-1.5.7_2: .......... done [s15amd64-setuptools2-job-07] | | | `-- Extracting binutils-2.44,1: .......... done [s15amd64-setuptools2-job-07] | | | `-- Installing gmp-6.3.0... [s15amd64-setuptools2-job-07] | | | `-- Extracting gmp-6.3.0: .......... done [s15amd64-setuptools2-job-07] | | | `-- Installing mpc-1.4.1... [s15amd64-setuptools2-job-07] | | | `-- Installing mpfr-4.2.2,1... [s15amd64-setuptools2-job-07] | | | `-- Extracting mpfr-4.2.2,1: .......... done [s15amd64-setuptools2-job-07] | | | `-- Extracting mpc-1.4.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting gcc14-14.2.0_6: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting blas-3.12.1: ........ done [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-CoinUtils-2.11.13_1... [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-Data-Netlib-1.2.11... [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-Data-Netlib-1.2.11: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-Data-Sample-1.2.13... [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-Data-Sample-1.2.13: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing openblas-0.3.33,2... [s15amd64-setuptools2-job-07] | | `-- Extracting openblas-0.3.33,2: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-CoinUtils-2.11.13_1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-Osi-0.108.12_1... [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-Osi-0.108.12_1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-asl-2.1.0... [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-asl-2.1.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-metis-1.3.10_3... [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-metis-1.3.10_3: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing coin-or-mumps-3.0.3_4... [s15amd64-setuptools2-job-07] | | `-- Installing lapack-3.12.1... [s15amd64-setuptools2-job-07] | | `-- Extracting lapack-3.12.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting coin-or-mumps-3.0.3_4: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting coin-or-Clp-1.17.11: .......... done [s15amd64-setuptools2-job-07] | `-- Installing coin-or-cgl-0.60.10_1... [s15amd64-setuptools2-job-07] | `-- Extracting coin-or-cgl-0.60.10_1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing nauty-2.8.6_1,1... [s15amd64-setuptools2-job-07] | `-- Extracting nauty-2.8.6_1,1: .......... done [s15amd64-setuptools2-job-07] `-- Extracting coin-or-cbc-2.10.13_1: .......... done [s15amd64-setuptools2-job-07] `-- Installing glpk-5.0... [s15amd64-setuptools2-job-07] `-- Extracting glpk-5.0: .......... done [s15amd64-setuptools2-job-07] Extracting py312-PuLP-3.3.2: .......... done ===== Message from gcc14-14.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from glpk-5.0: -- ===> NOTICE: The glpk port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> snakemake-9.20.0 depends on package: py312-PuLP>=2.3.1 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-pyyaml>0 - found ===> snakemake-9.20.0 depends on package: py312-referencing>0 - found ===> snakemake-9.20.0 depends on package: py312-requests>=2.8.1 - not found ===> Installing existing package /packages/All/py312-requests-2.34.2.pkg [s15amd64-setuptools2-job-07] Installing py312-requests-2.34.2... [s15amd64-setuptools2-job-07] `-- Installing py312-certifi-2026.6.17... [s15amd64-setuptools2-job-07] `-- Extracting py312-certifi-2026.6.17: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-charset-normalizer-3.4.7... [s15amd64-setuptools2-job-07] `-- Extracting py312-charset-normalizer-3.4.7: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-idna-3.18... [s15amd64-setuptools2-job-07] `-- Extracting py312-idna-3.18: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-pysocks-1.7.1_1... [s15amd64-setuptools2-job-07] `-- Extracting py312-pysocks-1.7.1_1: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-urllib3-2.7.0,1... [s15amd64-setuptools2-job-07] `-- Extracting py312-urllib3-2.7.0,1: .......... done [s15amd64-setuptools2-job-07] Extracting py312-requests-2.34.2: .......... done ===== Message from py312-urllib3-2.7.0,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> snakemake-9.20.0 depends on package: py312-requests>=2.8.1 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-smart-open>=4.0 - not found ===> Installing existing package /packages/All/py312-smart-open-8.0.0.pkg [s15amd64-setuptools2-job-07] Installing py312-smart-open-8.0.0... [s15amd64-setuptools2-job-07] `-- Installing py312-azure-common-1.1.28... [s15amd64-setuptools2-job-07] `-- Extracting py312-azure-common-1.1.28: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-azure-core-1.41.0... [s15amd64-setuptools2-job-07] | `-- Installing py312-aiohttp-3.14.1... [s15amd64-setuptools2-job-07] | | `-- Installing llhttp-9.4.2... [s15amd64-setuptools2-job-07] | | `-- Extracting llhttp-9.4.2: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-aiohappyeyeballs-2.6.2... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-aiohappyeyeballs-2.6.2: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-aiosignal-1.4.0... [s15amd64-setuptools2-job-07] | | `-- Installing py312-frozenlist-1.8.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-frozenlist-1.8.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-aiosignal-1.4.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-multidict-6.7.1... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-multidict-6.7.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-propcache-0.4.1_1... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-propcache-0.4.1_1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-yarl-1.24.2... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-yarl-1.24.2: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-aiohttp-3.14.1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-opentelemetry-api-1.43.0... [s15amd64-setuptools2-job-07] | `-- Extracting py312-opentelemetry-api-1.43.0: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-azure-core-1.41.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-azure-storage-blob-12.30.0.b1... [s15amd64-setuptools2-job-07] | `-- Installing py312-cryptography-48.0.1,1... [s15amd64-setuptools2-job-07] | | `-- Installing py312-cffi-2.0.0... [s15amd64-setuptools2-job-07] | | `-- Installing py312-pycparser-2.23... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-pycparser-2.23: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-cffi-2.0.0: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-cryptography-48.0.1,1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-isodate-0.7.2... [s15amd64-setuptools2-job-07] | `-- Extracting py312-isodate-0.7.2: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-azure-storage-blob-12.30.0.b1: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-backports.zstd-1.6.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-backports.zstd-1.6.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-boto3-1.43.36... [s15amd64-setuptools2-job-07] | `-- Installing py312-botocore-1.43.36... [s15amd64-setuptools2-job-07] | | `-- Installing py312-jmespath-1.1.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-jmespath-1.1.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-python-dateutil-2.9.0... [s15amd64-setuptools2-job-07] | | `-- Installing py312-six-1.17.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-six-1.17.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-python-dateutil-2.9.0: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-botocore-1.43.36: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-s3transfer-0.19.0... [s15amd64-setuptools2-job-07] | `-- Extracting py312-s3transfer-0.19.0: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-boto3-1.43.36: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-google-cloud-storage-3.12.0... [s15amd64-setuptools2-job-07] | `-- Installing py312-google-api-core-2.31.0... [s15amd64-setuptools2-job-07] | | `-- Installing py312-google-auth-2.55.1... [s15amd64-setuptools2-job-07] | | `-- Installing py312-pyasn1-modules-0.4.1... [s15amd64-setuptools2-job-07] | | | `-- Installing py312-pyasn1-0.6.0... [s15amd64-setuptools2-job-07] | | | `-- Extracting py312-pyasn1-0.6.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-pyasn1-modules-0.4.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-pyjwt-2.13.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-pyjwt-2.13.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-google-auth-2.55.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-googleapis-common-protos-1.75.0... [s15amd64-setuptools2-job-07] | | `-- Installing py312-protobuf-6.33.6,1... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-protobuf-6.33.6,1: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-googleapis-common-protos-1.75.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-grpcio-1.81.1... [s15amd64-setuptools2-job-07] | | `-- Installing c-ares-1.34.6... [s15amd64-setuptools2-job-07] | | `-- Extracting c-ares-1.34.6: .......... done [s15amd64-setuptools2-job-07] | | `-- Extracting py312-grpcio-1.81.1: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-grpcio-status-1.76.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-grpcio-status-1.76.0: .......... done [s15amd64-setuptools2-job-07] | | `-- Installing py312-proto-plus-1.28.0... [s15amd64-setuptools2-job-07] | | `-- Extracting py312-proto-plus-1.28.0: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-google-api-core-2.31.0: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-google-cloud-core-2.6.0... [s15amd64-setuptools2-job-07] | `-- Extracting py312-google-cloud-core-2.6.0: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-google-crc32c-1.8.0... [s15amd64-setuptools2-job-07] | | `-- Installing crc32c-1.1.2... [s15amd64-setuptools2-job-07] | | `-- Extracting crc32c-1.1.2: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-google-crc32c-1.8.0: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-google-resumable-media-2.10.0... [s15amd64-setuptools2-job-07] | `-- Extracting py312-google-resumable-media-2.10.0: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-google-cloud-storage-3.12.0: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-paramiko-3.5.1_2... [s15amd64-setuptools2-job-07] | `-- Installing py312-PyNaCl-1.6.2_1... [s15amd64-setuptools2-job-07] | | `-- Installing libsodium-1.0.22... [s15amd64-setuptools2-job-07] | | `-- Extracting libsodium-1.0.22: .......... done [s15amd64-setuptools2-job-07] | `-- Extracting py312-PyNaCl-1.6.2_1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-bcrypt-5.0.0_6... [s15amd64-setuptools2-job-07] | `-- Extracting py312-bcrypt-5.0.0_6: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-paramiko-3.5.1_2: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-wrapt-2.2.2... [s15amd64-setuptools2-job-07] `-- Extracting py312-wrapt-2.2.2: .......... done [s15amd64-setuptools2-job-07] Extracting py312-smart-open-8.0.0: .......... done ===== Message from crc32c-1.1.2: -- ===> NOTICE: The crc32c port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> snakemake-9.20.0 depends on package: py312-smart-open>=4.0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-common>=1.20.1 - not found ===> Installing existing package /packages/All/py312-snakemake-interface-common-1.23.0.pkg [s15amd64-setuptools2-job-07] Installing py312-snakemake-interface-common-1.23.0... [s15amd64-setuptools2-job-07] `-- Installing py312-argparse-dataclass-2.0.0... [s15amd64-setuptools2-job-07] `-- Extracting py312-argparse-dataclass-2.0.0: .......... done [s15amd64-setuptools2-job-07] Extracting py312-snakemake-interface-common-1.23.0: .......... done ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-common>=1.20.1 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-executor-plugins>=9.3.2 - not found ===> Installing existing package /packages/All/py312-snakemake-interface-executor-plugins-9.4.0.pkg [s15amd64-setuptools2-job-07] Installing py312-snakemake-interface-executor-plugins-9.4.0... [s15amd64-setuptools2-job-07] `-- Installing py312-throttler-1.2.3... [s15amd64-setuptools2-job-07] `-- Extracting py312-throttler-1.2.3: .......... done [s15amd64-setuptools2-job-07] Extracting py312-snakemake-interface-executor-plugins-9.4.0: .......... done ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-executor-plugins>=9.3.2 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-logger-plugins>=1.1.0 - not found ===> Installing existing package /packages/All/py312-snakemake-interface-logger-plugins-2.0.1.pkg [s15amd64-setuptools2-job-07] Installing py312-snakemake-interface-logger-plugins-2.0.1... [s15amd64-setuptools2-job-07] Extracting py312-snakemake-interface-logger-plugins-2.0.1: .......... done ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-logger-plugins>=1.1.0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-report-plugins>=1.2.0 - not found ===> Installing existing package /packages/All/py312-snakemake-interface-report-plugins-2.0.1.pkg [s15amd64-setuptools2-job-07] Installing py312-snakemake-interface-report-plugins-2.0.1... [s15amd64-setuptools2-job-07] Extracting py312-snakemake-interface-report-plugins-2.0.1: .......... done ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-report-plugins>=1.2.0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-scheduler-plugins>=2.0.0 - not found ===> Installing existing package /packages/All/py312-snakemake-interface-scheduler-plugins-2.0.2.pkg [s15amd64-setuptools2-job-07] Installing py312-snakemake-interface-scheduler-plugins-2.0.2... [s15amd64-setuptools2-job-07] Extracting py312-snakemake-interface-scheduler-plugins-2.0.2: .......... done ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-scheduler-plugins>=2.0.0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-storage-plugins>=4.4.1 - not found ===> Installing existing package /packages/All/py312-snakemake-interface-storage-plugins-4.4.1.pkg [s15amd64-setuptools2-job-07] Installing py312-snakemake-interface-storage-plugins-4.4.1... [s15amd64-setuptools2-job-07] `-- Installing py312-tenacity-9.1.4... [s15amd64-setuptools2-job-07] `-- Extracting py312-tenacity-9.1.4: .......... done [s15amd64-setuptools2-job-07] Extracting py312-snakemake-interface-storage-plugins-4.4.1: .......... done ===> snakemake-9.20.0 depends on package: py312-snakemake-interface-storage-plugins>=4.4.1 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-sqlmodel>=0.0.37 - not found ===> Installing existing package /packages/All/py312-sqlmodel-0.0.39.pkg [s15amd64-setuptools2-job-07] Installing py312-sqlmodel-0.0.39... [s15amd64-setuptools2-job-07] `-- Installing py312-pydantic2-2.13.4... [s15amd64-setuptools2-job-07] | `-- Installing py312-annotated-types-0.7.0... [s15amd64-setuptools2-job-07] | `-- Extracting py312-annotated-types-0.7.0: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-pydantic-core-2.46.4_1... [s15amd64-setuptools2-job-07] | `-- Extracting py312-pydantic-core-2.46.4_1: .......... done [s15amd64-setuptools2-job-07] | `-- Installing py312-typing-inspection-0.4.2... [s15amd64-setuptools2-job-07] | `-- Extracting py312-typing-inspection-0.4.2: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-pydantic2-2.13.4: .......... done [s15amd64-setuptools2-job-07] `-- Installing py312-sqlalchemy20-2.0.51... [s15amd64-setuptools2-job-07] | `-- Installing py312-greenlet-3.5.3... [s15amd64-setuptools2-job-07] | `-- Extracting py312-greenlet-3.5.3: .......... done [s15amd64-setuptools2-job-07] `-- Extracting py312-sqlalchemy20-2.0.51: .......... done [s15amd64-setuptools2-job-07] Extracting py312-sqlmodel-0.0.39: .......... done ===> snakemake-9.20.0 depends on package: py312-sqlmodel>=0.0.37 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-tabulate>0 - not found ===> Installing existing package /packages/All/py312-tabulate-0.10.0.pkg [s15amd64-setuptools2-job-07] Installing py312-tabulate-0.10.0... [s15amd64-setuptools2-job-07] `-- Installing py312-wcwidth-0.8.2... [s15amd64-setuptools2-job-07] `-- Extracting py312-wcwidth-0.8.2: .......... done [s15amd64-setuptools2-job-07] Extracting py312-tabulate-0.10.0: .......... done ===> snakemake-9.20.0 depends on package: py312-tabulate>0 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on package: py312-tenacity>=9.1.4 - found ===> snakemake-9.20.0 depends on package: py312-throttler>0 - found ===> snakemake-9.20.0 depends on package: py312-wrapt>0 - found ===> snakemake-9.20.0 depends on package: py312-yte>=1.5.5 - not found ===> Installing existing package /packages/All/py312-yte-1.9.4.pkg [s15amd64-setuptools2-job-07] Installing py312-yte-1.9.4... [s15amd64-setuptools2-job-07] Extracting py312-yte-1.9.4: .......... done ===> snakemake-9.20.0 depends on package: py312-yte>=1.5.5 - found ===> Returning to build of snakemake-9.20.0 ===> snakemake-9.20.0 depends on file: /usr/local/bin/python3.12 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for snakemake-9.20.0 ===> Generating temporary packing list running install /usr/local/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing src/snakemake.egg-info/PKG-INFO writing dependency_links to src/snakemake.egg-info/dependency_links.txt writing entry points to src/snakemake.egg-info/entry_points.txt writing requirements to src/snakemake.egg-info/requires.txt writing top-level names to src/snakemake.egg-info/top_level.txt reading manifest file 'src/snakemake.egg-info/SOURCES.txt' adding license file 'LICENSE.md' writing manifest file 'src/snakemake.egg-info/SOURCES.txt' running install_lib creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/api.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/argparse.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/prefix_lookup.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests copying build/lib/snakemake/common/tests/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases copying build/lib/snakemake/common/tests/testcases/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/Snakefile -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/caption.rst -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/simple creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/Snakefile -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/caption.rst -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/configfile.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/typing.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/workdir_handler.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/common/git.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common copying build/lib/snakemake/modules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/decorators.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/gui.html -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/workflow.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report copying build/lib/snakemake/report/common.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report copying build/lib/snakemake/report/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/logo.svg -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/index.html.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template copying build/lib/snakemake/report/html_reporter/template/style.css -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/icon.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/toggle.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/search_results.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/common.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/subcategory.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_graph.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_heading.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/list_item.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_results.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/metadata.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/report_info.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_info.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/content.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_menu.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/category.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/rule_info.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/breadcrumbs.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/button.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/result_view_button.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/navbar.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/app.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/abstract_view_manager.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/stats.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/template/components/menu.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components copying build/lib/snakemake/report/html_reporter/common.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter copying build/lib/snakemake/report/html_reporter/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/metadata.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/runtimes.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/common.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/packages.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/results.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/timeline.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/configfiles.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/categories.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/report/html_reporter/data/rulegraph.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data copying build/lib/snakemake/notebook.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings copying build/lib/snakemake/settings/types.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings copying build/lib/snakemake/settings/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings copying build/lib/snakemake/settings/enums.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings copying build/lib/snakemake/logging.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/subpath.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/rule_items_proxy.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/evaluate.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/lookup.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/as_py_module.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/exists.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/branch.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/collect.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils copying build/lib/snakemake/ioutils/input.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering copying build/lib/snakemake/shell.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/__main__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment copying build/lib/snakemake/profiles.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/wrapper.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/rules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling copying build/lib/snakemake/scheduling/job_scheduler.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling copying build/lib/snakemake/scheduling/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling copying build/lib/snakemake/scheduling/milp.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling copying build/lib/snakemake/scheduling/greedy.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence copying build/lib/snakemake/persistence/db.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence copying build/lib/snakemake/persistence/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence copying build/lib/snakemake/persistence/file.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence copying build/lib/snakemake/checkpoints.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/jobs.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/pathvars.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/S3.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/GS.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote copying build/lib/snakemake/gui.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/storage.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/flags copying build/lib/snakemake/io/flags/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/flags copying build/lib/snakemake/io/flags/access_patterns.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/flags copying build/lib/snakemake/io/fmt.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io copying build/lib/snakemake/io/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io copying build/lib/snakemake/resources.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/target_jobs.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/benchmark.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/report.css -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/cli.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/iocontainers.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/path_modifier.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/spawn_jobs.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/parser.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/ruleinfo.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/utils.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/dag.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/exceptions.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors copying build/lib/snakemake/executors/touch.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors copying build/lib/snakemake/executors/dryrun.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors copying build/lib/snakemake/executors/local.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets copying build/lib/snakemake/assets/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-tooltip copying build/lib/snakemake/assets/data/vega-tooltip/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-tooltip creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega copying build/lib/snakemake/assets/data/vega/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega copying build/lib/snakemake/assets/data/vega/vega.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-shape copying build/lib/snakemake/assets/data/d3-shape/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-shape creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-schema-url-parser copying build/lib/snakemake/assets/data/vega-schema-url-parser/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-schema-url-parser creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-geo copying build/lib/snakemake/assets/data/d3-geo/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-geo creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-contour copying build/lib/snakemake/assets/data/d3-contour/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-contour creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-hierarchy copying build/lib/snakemake/assets/data/d3-hierarchy/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-hierarchy creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/array-flat-polyfill copying build/lib/snakemake/assets/data/array-flat-polyfill/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/array-flat-polyfill creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-interpolate copying build/lib/snakemake/assets/data/d3-interpolate/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-interpolate creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-path copying build/lib/snakemake/assets/data/d3-path/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-path creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-color copying build/lib/snakemake/assets/data/d3-color/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-color creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/json-stringify-pretty-compact copying build/lib/snakemake/assets/data/json-stringify-pretty-compact/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/json-stringify-pretty-compact creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/commons-math copying build/lib/snakemake/assets/data/commons-math/LICENSE.txt -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/commons-math copying build/lib/snakemake/assets/data/commons-math/NOTICE.txt -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/commons-math creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/@types-estree copying build/lib/snakemake/assets/data/@types-estree/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/@types-estree creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fast-json-stable-stringify copying build/lib/snakemake/assets/data/fast-json-stable-stringify/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fast-json-stable-stringify creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-dsv copying build/lib/snakemake/assets/data/d3-dsv/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-dsv creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-format copying build/lib/snakemake/assets/data/d3-format/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-format creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/tailwindcss copying build/lib/snakemake/assets/data/tailwindcss/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/tailwindcss copying build/lib/snakemake/assets/data/tailwindcss/tailwind.css -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/tailwindcss creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/shapefile copying build/lib/snakemake/assets/data/shapefile/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/shapefile creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/pygments copying build/lib/snakemake/assets/data/pygments/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/pygments creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-regression copying build/lib/snakemake/assets/data/d3-regression/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-regression creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/regression copying build/lib/snakemake/assets/data/regression/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/regression creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/@types-clone copying build/lib/snakemake/assets/data/@types-clone/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/@types-clone creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-geo-projection copying build/lib/snakemake/assets/data/d3-geo-projection/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-geo-projection creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/heroicons copying build/lib/snakemake/assets/data/heroicons/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/heroicons creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/snakemake copying build/lib/snakemake/assets/data/snakemake/LICENSE.md -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-quadtree copying build/lib/snakemake/assets/data/d3-quadtree/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-quadtree creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-timer copying build/lib/snakemake/assets/data/d3-timer/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-timer creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fabric copying build/lib/snakemake/assets/data/fabric/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fabric creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/topojson-client copying build/lib/snakemake/assets/data/topojson-client/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/topojson-client creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/science copying build/lib/snakemake/assets/data/science/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/science creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/esprima copying build/lib/snakemake/assets/data/esprima/LICENSE.BSD -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/esprima creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-scale copying build/lib/snakemake/assets/data/d3-scale/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-scale creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-time-format copying build/lib/snakemake/assets/data/d3-time-format/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-time-format creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fast-json-patch copying build/lib/snakemake/assets/data/fast-json-patch/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fast-json-patch creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/delaunator copying build/lib/snakemake/assets/data/delaunator/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/delaunator creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-dispatch copying build/lib/snakemake/assets/data/d3-dispatch/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-dispatch creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-lite copying build/lib/snakemake/assets/data/vega-lite/vega-lite.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-lite copying build/lib/snakemake/assets/data/vega-lite/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-lite creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/quickselect copying build/lib/snakemake/assets/data/quickselect/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/quickselect creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-time copying build/lib/snakemake/assets/data/d3-time/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-time creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-themes copying build/lib/snakemake/assets/data/vega-themes/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-themes creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-force copying build/lib/snakemake/assets/data/d3-force/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-force creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fast-deep-equal copying build/lib/snakemake/assets/data/fast-deep-equal/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/fast-deep-equal creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/semver copying build/lib/snakemake/assets/data/semver/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/semver creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-delaunay copying build/lib/snakemake/assets/data/d3-delaunay/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-delaunay creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/prop-types copying build/lib/snakemake/assets/data/prop-types/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/prop-types copying build/lib/snakemake/assets/data/prop-types/prop-types.min.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/prop-types creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/react copying build/lib/snakemake/assets/data/react/react.production.min.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/react copying build/lib/snakemake/assets/data/react/react-dom.production.min.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/react copying build/lib/snakemake/assets/data/react/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/react creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/hashlru copying build/lib/snakemake/assets/data/hashlru/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/hashlru creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-embed copying build/lib/snakemake/assets/data/vega-embed/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-embed copying build/lib/snakemake/assets/data/vega-embed/vega-embed.js -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/vega-embed creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/clone copying build/lib/snakemake/assets/data/clone/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/clone creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-array copying build/lib/snakemake/assets/data/d3-array/LICENSE -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/data/d3-array copying build/lib/snakemake/cwl.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake copying build/lib/snakemake/output_index.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting copying build/lib/snakemake/linting/rules.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting copying build/lib/snakemake/linting/links.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting copying build/lib/snakemake/ioflags.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching copying build/lib/snakemake/caching/rule.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching copying build/lib/snakemake/caching/local.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching copying build/lib/snakemake/caching/storage.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching copying build/lib/snakemake/caching/hash.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/script copying build/lib/snakemake/script/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/script creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests copying build/lib/snakemake/unit_tests/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests creating /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/conftest.py.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/templates copying build/lib/snakemake/sourcecache.py -> /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/api.py to api.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/argparse.py to argparse.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/prefix_lookup.py to prefix_lookup.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/simple/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tests/testcases/groups/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/configfile.py to configfile.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/typing.py to typing.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/tbdstring.py to tbdstring.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/workdir_handler.py to workdir_handler.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/common/git.py to git.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/modules.py to modules.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/decorators.py to decorators.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/workflow.py to workflow.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/rulegraph_spec.py to rulegraph_spec.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/common.py to common.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/template/components/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/common.py to common.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/metadata.py to metadata.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/runtimes.py to runtimes.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/common.py to common.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/packages.py to packages.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/rules.py to rules.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/results.py to results.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/timeline.py to timeline.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/configfiles.py to configfiles.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/categories.py to categories.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/report/html_reporter/data/rulegraph.py to rulegraph.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/notebook.py to notebook.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings/types.py to types.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/settings/enums.py to enums.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/logging.py to logging.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/subpath.py to subpath.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/rule_items_proxy.py to rule_items_proxy.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/evaluate.py to evaluate.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/lookup.py to lookup.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/as_py_module.py to as_py_module.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/exists.py to exists.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/branch.py to branch.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/collect.py to collect.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioutils/input.py to input.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering/yte.py to yte.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/template_rendering/jinja2.py to jinja2.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/shell.py to shell.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/__main__.py to __main__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment/containerize.py to containerize.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment/env_modules.py to env_modules.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment/singularity.py to singularity.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/deployment/conda.py to conda.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/profiles.py to profiles.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/wrapper.py to wrapper.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/rules.py to rules.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling/job_scheduler.py to job_scheduler.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling/milp.py to milp.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/scheduling/greedy.py to greedy.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence/db.py to db.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/persistence/file.py to file.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/checkpoints.py to checkpoints.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/jobs.py to jobs.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/pathvars.py to pathvars.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/SFTP.py to SFTP.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/S3.py to S3.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/GS.py to GS.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/gridftp.py to gridftp.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/NCBI.py to NCBI.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/dropbox.py to dropbox.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/HTTP.py to HTTP.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/FTP.py to FTP.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/zenodo.py to zenodo.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/AzBlob.py to AzBlob.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/EGA.py to EGA.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/webdav.py to webdav.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/XRootD.py to XRootD.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/gfal.py to gfal.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/remote/iRODS.py to iRODS.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/gui.py to gui.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/storage.py to storage.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/flags/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/flags/access_patterns.py to access_patterns.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/fmt.py to fmt.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/io/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/resources.py to resources.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/target_jobs.py to target_jobs.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/benchmark.py to benchmark.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/cli.py to cli.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/iocontainers.py to iocontainers.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/path_modifier.py to path_modifier.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/spawn_jobs.py to spawn_jobs.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/parser.py to parser.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ruleinfo.py to ruleinfo.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/utils.py to utils.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/dag.py to dag.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/exceptions.py to exceptions.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors/touch.py to touch.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors/dryrun.py to dryrun.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors/google_lifesciences_helper.py to google_lifesciences_helper.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/executors/local.py to local.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/assets/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/cwl.py to cwl.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/output_index.py to output_index.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting/rules.py to rules.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting/links.py to links.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/linting/snakefiles.py to snakefiles.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/ioflags.py to ioflags.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching/rule.py to rule.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching/local.py to local.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching/storage.py to storage.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/caching/hash.py to hash.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/script/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/unit_tests/templates/__init__.py to __init__.cpython-312.pyc byte-compiling /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake/sourcecache.py to sourcecache.cpython-312.pyc writing byte-compilation script '/tmp/tmpld4vl6d8.py' /usr/local/bin/python3.12 /tmp/tmpld4vl6d8.py removing /tmp/tmpld4vl6d8.py running install_egg_info Copying src/snakemake.egg-info to /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/lib/python3.12/site-packages/snakemake-9.20.0-py3.12.egg-info running install_scripts Installing snakemake script to /wrkdirs/usr/ports/misc/snakemake/work/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/misc/snakemake/work/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-07-12T05:54:23+0000' 'PKG_NOTE_ports_top_git_hash=9d0203aad0254f4adb0e81c242ad6ec8717647a5' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=12f571b8a3f8b16c534168f910590b64efa6a9e1' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.8' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for snakemake-9.20.0 ===> Building snakemake-9.20.0 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for snakemake-9.20.0 build of misc/snakemake | snakemake-9.20.0 ended at Sun Jul 12 14:59:42 JST 2026 build time: 00:05:59